From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 66A27138334 for ; Sun, 14 Oct 2018 16:34:47 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 40EBBE086E; Sun, 14 Oct 2018 16:34:46 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 1700FE086E for ; Sun, 14 Oct 2018 16:34:45 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id F032F335CD2 for ; Sun, 14 Oct 2018 16:34:43 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id DBC3543C for ; Sun, 14 Oct 2018 16:34:41 +0000 (UTC) From: "Andreas Sturmlechner" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andreas Sturmlechner" Message-ID: <1539534869.fad62bd824b9ea69a19200061544567eb9e78730.asturm@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/express/ X-VCS-Repository: repo/gentoo X-VCS-Files: sci-biology/express/Manifest sci-biology/express/express-0.9.5-r1.ebuild X-VCS-Directories: sci-biology/express/ X-VCS-Committer: asturm X-VCS-Committer-Name: Andreas Sturmlechner X-VCS-Revision: fad62bd824b9ea69a19200061544567eb9e78730 X-VCS-Branch: master Date: Sun, 14 Oct 2018 16:34:41 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: d8cff5c0-2d0f-4d0e-a6ba-7641233efdcf X-Archives-Hash: 4a5921b3f502c52494bc54a055dfb8e3 commit: fad62bd824b9ea69a19200061544567eb9e78730 Author: Andreas Sturmlechner gentoo org> AuthorDate: Sun Oct 14 16:30:19 2018 +0000 Commit: Andreas Sturmlechner gentoo org> CommitDate: Sun Oct 14 16:34:29 2018 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fad62bd8 sci-biology/express: Drop old Signed-off-by: Andreas Sturmlechner gentoo.org> Package-Manager: Portage-2.3.51, Repoman-2.3.11 sci-biology/express/Manifest | 1 - sci-biology/express/express-0.9.5-r1.ebuild | 35 ----------------------------- 2 files changed, 36 deletions(-) diff --git a/sci-biology/express/Manifest b/sci-biology/express/Manifest index 2e05adafed7..9c2cc4ebf49 100644 --- a/sci-biology/express/Manifest +++ b/sci-biology/express/Manifest @@ -1,2 +1 @@ -DIST express-0.9.5-src.tgz 766024 BLAKE2B 3818bc9de30a5201d587d3e18feee85f3014b68672eaef32ce0fa5989e0ce2cd7ee8bb8c617db0cde2d061db0f31ba76c49aa03f66be92c40826a6ede35ebca9 SHA512 3a7360ffbe57f4f712b6db38d551d31384d995050a86238d79299edb12f0e7f5dca6f362b7858b5051ea2879af2b3559f78f9780d75ef2ef6fdad7398f781403 DIST express-1.5.1-src.tgz 931166 BLAKE2B 5eb185e4b001f26f0dd32885b256b9fa48c89f546d67d7f8472cade69dde25375a5fc8efed5f01b615d63b641b674f7034a13f9483eb7967a6fd784a55c8878e SHA512 59cf6511a879311247c65334285ea056d571d4fd950aa6243041fa10075ff0d1ddd2afbcfe12e5f7f3e7cdd22fe37fd7f6b43ed4a8eb28d7a33d72366dc549ee diff --git a/sci-biology/express/express-0.9.5-r1.ebuild b/sci-biology/express/express-0.9.5-r1.ebuild deleted file mode 100644 index 945398a17a8..00000000000 --- a/sci-biology/express/express-0.9.5-r1.ebuild +++ /dev/null @@ -1,35 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit cmake-utils - -DESCRIPTION="Streaming RNA-Seq Analysis" -HOMEPAGE="http://bio.math.berkeley.edu/eXpress/" -SRC_URI="http://bio.math.berkeley.edu/eXpress/downloads/express-${PV}/express-${PV}-src.tgz" - -LICENSE="Artistic" -SLOT="0" -KEYWORDS="~amd64 ~x86" - -DEPEND=" - >=dev-libs/boost-1.52.0:= - sys-libs/zlib - sci-biology/bamtools" -RDEPEND="${DEPEND}" - -S="${WORKDIR}/${P}-src" - -CMAKE_USE_DIR="${S}/src" - -src_prepare() { - sed \ - -e 's|"${CMAKE_CURRENT_SOURCE_DIR}/../bamtools/lib/libbamtools.a"|bamtools|' \ - -e '1 a find_package(Boost 1.52 COMPONENTS filesystem program_options system thread)' \ - -e '1 a find_package(ZLIB)' \ - -e '/add_executable/ a include_directories("/usr/include/bamtools")' \ - -i src/CMakeLists.txt || die - - cmake-utils_src_prepare -}