From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 88D691382C5 for ; Tue, 1 May 2018 05:55:45 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 97B0EE0871; Tue, 1 May 2018 05:55:44 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 738A6E0871 for ; Tue, 1 May 2018 05:55:43 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id A532A335C78 for ; Tue, 1 May 2018 05:55:42 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 9DF31260 for ; Tue, 1 May 2018 05:55:40 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1525154121.35f7bda074493d740f250c2b434f66636082272d.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/bamql/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/bamql/bamql-9999.ebuild X-VCS-Directories: sci-biology/bamql/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 35f7bda074493d740f250c2b434f66636082272d X-VCS-Branch: master Date: Tue, 1 May 2018 05:55:40 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: b97a68c4-0896-4876-8b34-d71bf5cec14e X-Archives-Hash: 407b4f3d9be3abba6b21e98894f2d27b commit: 35f7bda074493d740f250c2b434f66636082272d Author: Martin Mokrejs fold natur cuni cz> AuthorDate: Tue May 1 05:55:21 2018 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Tue May 1 05:55:21 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=35f7bda0 sci-biology/bamql: add live ebuild Package-Manager: Portage-2.3.31, Repoman-2.3.9 sci-biology/bamql/bamql-9999.ebuild | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/sci-biology/bamql/bamql-9999.ebuild b/sci-biology/bamql/bamql-9999.ebuild new file mode 100644 index 000000000..44a7d85f5 --- /dev/null +++ b/sci-biology/bamql/bamql-9999.ebuild @@ -0,0 +1,28 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools git-r3 + +DESCRIPTION="Extract reads from BAM files" +HOMEPAGE="https://github.com/BoutrosLaboratory/bamql + https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1162-y" +EGIT_REPO_URI="https://github.com/BoutrosLaboratory/bamql.git" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND=" + sys-devel/llvm:= + sys-apps/util-linux + sci-libs/htslib + dev-libs/libpcre" +RDEPEND="${DEPEND}" + +src_prepare(){ + eautoreconf + default +}