From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/jellyfish/
Date: Mon, 23 Apr 2018 19:13:41 +0000 (UTC) [thread overview]
Message-ID: <1524510801.026f3272fc9085f69f1a6caf4a1ccb8b9d887ab7.mmokrejs@gentoo> (raw)
commit: 026f3272fc9085f69f1a6caf4a1ccb8b9d887ab7
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Apr 23 19:13:21 2018 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Apr 23 19:13:21 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=026f3272
sci-biology/jellyfish: install bundled PDF manual
And do not download an old version at all.
Package-Manager: Portage-2.3.31, Repoman-2.3.9
sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild | 5 ++---
.../jellyfish/{jellyfish-2.2.6-r1.ebuild => jellyfish-2.2.9.ebuild} | 5 ++---
2 files changed, 4 insertions(+), 6 deletions(-)
diff --git a/sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild b/sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild
index 54cc724eb..692c9e9ee 100644
--- a/sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild
+++ b/sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild
@@ -7,8 +7,7 @@ inherit eutils flag-o-matic autotools
DESCRIPTION="k-mer counter within reads for assemblies"
HOMEPAGE="http://www.genome.umd.edu/jellyfish.html"
-SRC_URI="https://github.com/gmarcais/Jellyfish/releases/download/v${PV}/${P}.tar.gz
- ftp://ftp.genome.umd.edu/pub/jellyfish/JellyfishUserGuide.pdf"
+SRC_URI="https://github.com/gmarcais/Jellyfish/releases/download/v${PV}/${P}.tar.gz"
# older version is hidden in trinityrnaseq_r20140413p1/trinity-plugins/jellyfish-1.1.11
@@ -48,5 +47,5 @@ src_install(){
mv "${ED}"/usr/include/"${P}"/"${PN}"/* "${ED}/usr/include/${PN}${SLOT}/" || die
rm -r "${ED}/usr/include/${P}" || die
mv "${ED}"/usr/share/man/man1/jellyfish.1 "${ED}"/usr/share/man/man1/jellyfish"${SLOT}".1 || die
- dodoc "${DISTDIR}"/JellyfishUserGuide.pdf
+ dodoc doc/jellyfish.pdf
}
diff --git a/sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild b/sci-biology/jellyfish/jellyfish-2.2.9.ebuild
similarity index 92%
copy from sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild
copy to sci-biology/jellyfish/jellyfish-2.2.9.ebuild
index 54cc724eb..692c9e9ee 100644
--- a/sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild
+++ b/sci-biology/jellyfish/jellyfish-2.2.9.ebuild
@@ -7,8 +7,7 @@ inherit eutils flag-o-matic autotools
DESCRIPTION="k-mer counter within reads for assemblies"
HOMEPAGE="http://www.genome.umd.edu/jellyfish.html"
-SRC_URI="https://github.com/gmarcais/Jellyfish/releases/download/v${PV}/${P}.tar.gz
- ftp://ftp.genome.umd.edu/pub/jellyfish/JellyfishUserGuide.pdf"
+SRC_URI="https://github.com/gmarcais/Jellyfish/releases/download/v${PV}/${P}.tar.gz"
# older version is hidden in trinityrnaseq_r20140413p1/trinity-plugins/jellyfish-1.1.11
@@ -48,5 +47,5 @@ src_install(){
mv "${ED}"/usr/include/"${P}"/"${PN}"/* "${ED}/usr/include/${PN}${SLOT}/" || die
rm -r "${ED}/usr/include/${P}" || die
mv "${ED}"/usr/share/man/man1/jellyfish.1 "${ED}"/usr/share/man/man1/jellyfish"${SLOT}".1 || die
- dodoc "${DISTDIR}"/JellyfishUserGuide.pdf
+ dodoc doc/jellyfish.pdf
}
next reply other threads:[~2018-04-23 19:13 UTC|newest]
Thread overview: 29+ messages / expand[flat|nested] mbox.gz Atom feed top
2018-04-23 19:13 Martin Mokrejs [this message]
-- strict thread matches above, loose matches on Subject: below --
2023-04-20 4:11 [gentoo-commits] proj/sci:master commit in: sci-biology/jellyfish/ Horea Christian
2023-04-20 4:11 Horea Christian
2023-04-20 4:11 Horea Christian
2022-01-14 10:10 Andrew Ammerlaan
2021-06-06 0:38 Jakov Smolić
2021-03-06 11:34 Andrew Ammerlaan
2021-03-06 11:34 Andrew Ammerlaan
2019-07-18 16:10 Martin Mokrejs
2018-09-11 11:21 Martin Mokrejs
2018-05-01 22:13 Martin Mokrejs
2018-04-21 19:43 Martin Mokrejs
2017-11-21 16:09 Martin Mokrejs
2017-05-15 15:56 Martin Mokrejs
2017-05-15 14:21 Martin Mokrejs
2017-05-15 14:17 Martin Mokrejs
2016-12-09 16:24 Martin Mokrejs
2016-03-06 19:44 Justin Lecher
2015-11-13 19:11 Martin Mokrejs
2015-05-04 14:45 Justin Lecher
2015-04-30 22:02 Martin Mokrejs
2015-04-30 21:29 Martin Mokrejs
2015-04-30 21:28 Martin Mokrejs
2015-04-30 20:32 Martin Mokrejs
2015-04-30 10:11 Martin Mokrejs
2015-03-31 22:34 Martin Mokrejs
2015-03-31 19:50 Martin Mokrejs
2015-01-07 21:43 Martin Mokrejs
2014-07-02 23:15 Martin Mokrejs
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