* [gentoo-commits] proj/sci:master commit in: sci-biology/BlastToSam/
@ 2015-04-29 19:36 Martin Mokrejs
0 siblings, 0 replies; 4+ messages in thread
From: Martin Mokrejs @ 2015-04-29 19:36 UTC (permalink / raw
To: gentoo-commits
commit: 8b9ba1e22ea4df15ddbb35556ad9a92f9b397ea6
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Apr 29 19:36:12 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Apr 29 19:36:12 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8b9ba1e2
sci-biology/BlastToSam: new package, works
Package-Manager: portage-2.2.18
sci-biology/BlastToSam/BlastToSam-9999.ebuild | 31 +++++++++++++++++++++++++++
sci-biology/BlastToSam/ChangeLog | 9 ++++++++
sci-biology/BlastToSam/metadata.xml | 9 ++++++++
3 files changed, 49 insertions(+)
diff --git a/sci-biology/BlastToSam/BlastToSam-9999.ebuild b/sci-biology/BlastToSam/BlastToSam-9999.ebuild
new file mode 100644
index 0000000..7b476cd
--- /dev/null
+++ b/sci-biology/BlastToSam/BlastToSam-9999.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit git-r3 java-pkg-2 java-ant-2
+
+DESCRIPTION="Convert NCBI BLAST output to SAM format"
+HOMEPAGE="https://github.com/AstrorEnales/BlastToSam"
+EGIT_REPO_URI="https://github.com/AstrorEnales/BlastToSam.git"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+RDEPEND=">=virtual/jre-1.5:*"
+DEPEND="${RDEPEND}
+ >=virtual/jdk-1.5:*
+ dev-java/ant-core"
+
+src_compile() {
+ ant compile || die
+}
+
+src_install() {
+ java-pkg_dojar build/jar/BlastToSam.jar
+ java-pkg_dolauncher
+ dodoc README.md
+}
diff --git a/sci-biology/BlastToSam/ChangeLog b/sci-biology/BlastToSam/ChangeLog
new file mode 100644
index 0000000..945f023
--- /dev/null
+++ b/sci-biology/BlastToSam/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/BlastToSam
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*BlastToSam-9999 (29 Apr 2015)
+
+ 29 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +BlastToSam-9999.ebuild, +metadata.xml:
+ sci-biology/BlastToSam: new package, works
diff --git a/sci-biology/BlastToSam/metadata.xml b/sci-biology/BlastToSam/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/BlastToSam/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/BlastToSam/
@ 2018-04-22 19:51 Martin Mokrejs
0 siblings, 0 replies; 4+ messages in thread
From: Martin Mokrejs @ 2018-04-22 19:51 UTC (permalink / raw
To: gentoo-commits
commit: c684f9b0851d3d41896b1de18e82b2be84859ff1
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Apr 22 19:50:40 2018 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Apr 22 19:50:40 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c684f9b0
sci-biology/BlastToSam: move the -9999 ebuild to 1.1 version
ant is complaining about jython missing but seems harmless
Package-Manager: Portage-2.3.28, Repoman-2.3.9
.../{BlastToSam-9999.ebuild => BlastToSam-1.1.ebuild} | 12 +++++++-----
1 file changed, 7 insertions(+), 5 deletions(-)
diff --git a/sci-biology/BlastToSam/BlastToSam-9999.ebuild b/sci-biology/BlastToSam/BlastToSam-1.1.ebuild
similarity index 65%
rename from sci-biology/BlastToSam/BlastToSam-9999.ebuild
rename to sci-biology/BlastToSam/BlastToSam-1.1.ebuild
index 728691cfb..6053606ad 100644
--- a/sci-biology/BlastToSam/BlastToSam-9999.ebuild
+++ b/sci-biology/BlastToSam/BlastToSam-1.1.ebuild
@@ -1,23 +1,25 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=6
inherit git-r3 java-pkg-2 java-ant-2
-DESCRIPTION="Convert NCBI BLAST output to SAM format"
+DESCRIPTION="Convert NCBI BLAST+ Pairwise/XML (-outfmt 0 or 5) output to SAM v1.4"
HOMEPAGE="https://github.com/AstrorEnales/BlastToSam"
EGIT_REPO_URI="https://github.com/AstrorEnales/BlastToSam.git"
+EGIT_COMMIT="8f543ff1640b64e44701cb534e2959ff46469b2e"
LICENSE="MIT"
SLOT="0"
-KEYWORDS=""
+KEYWORDS="~amd64 ~x86"
IUSE=""
RDEPEND=">=virtual/jre-1.5:*"
DEPEND="${RDEPEND}
>=virtual/jdk-1.5:*
- dev-java/ant-core"
+ dev-java/ant-core
+ dev-java/jython"
src_compile() {
ant compile || die
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/BlastToSam/
@ 2021-03-05 15:36 Andrew Ammerlaan
0 siblings, 0 replies; 4+ messages in thread
From: Andrew Ammerlaan @ 2021-03-05 15:36 UTC (permalink / raw
To: gentoo-commits
commit: 22f184981c5f5e48cbbdada5e4a3b1234c64c123
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Fri Mar 5 15:30:40 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Fri Mar 5 15:30:40 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=22f18498
sci-biology/BlastToSam: EAPI bump
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/BlastToSam/BlastToSam-1.1.ebuild | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/sci-biology/BlastToSam/BlastToSam-1.1.ebuild b/sci-biology/BlastToSam/BlastToSam-1.1.ebuild
index 6053606ad..775889330 100644
--- a/sci-biology/BlastToSam/BlastToSam-1.1.ebuild
+++ b/sci-biology/BlastToSam/BlastToSam-1.1.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=7
inherit git-r3 java-pkg-2 java-ant-2
@@ -13,13 +13,13 @@ EGIT_COMMIT="8f543ff1640b64e44701cb534e2959ff46469b2e"
LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE=""
RDEPEND=">=virtual/jre-1.5:*"
DEPEND="${RDEPEND}
>=virtual/jdk-1.5:*
dev-java/ant-core
- dev-java/jython"
+ dev-java/jython
+"
src_compile() {
ant compile || die
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/BlastToSam/
@ 2023-05-14 4:17 Horea Christian
0 siblings, 0 replies; 4+ messages in thread
From: Horea Christian @ 2023-05-14 4:17 UTC (permalink / raw
To: gentoo-commits
commit: 35cbfb41f02b7835601675bbba8b5ddf0338bb0a
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sun May 14 04:17:08 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun May 14 04:17:08 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=35cbfb41
sci-biology/BlastToSam: treeclean
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/BlastToSam/BlastToSam-1.1.ebuild | 32 ----------------------------
sci-biology/BlastToSam/metadata.xml | 15 -------------
2 files changed, 47 deletions(-)
diff --git a/sci-biology/BlastToSam/BlastToSam-1.1.ebuild b/sci-biology/BlastToSam/BlastToSam-1.1.ebuild
deleted file mode 100644
index 775889330..000000000
--- a/sci-biology/BlastToSam/BlastToSam-1.1.ebuild
+++ /dev/null
@@ -1,32 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit git-r3 java-pkg-2 java-ant-2
-
-DESCRIPTION="Convert NCBI BLAST+ Pairwise/XML (-outfmt 0 or 5) output to SAM v1.4"
-HOMEPAGE="https://github.com/AstrorEnales/BlastToSam"
-EGIT_REPO_URI="https://github.com/AstrorEnales/BlastToSam.git"
-EGIT_COMMIT="8f543ff1640b64e44701cb534e2959ff46469b2e"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND=">=virtual/jre-1.5:*"
-DEPEND="${RDEPEND}
- >=virtual/jdk-1.5:*
- dev-java/ant-core
- dev-java/jython
-"
-
-src_compile() {
- ant compile || die
-}
-
-src_install() {
- java-pkg_dojar build/jar/BlastToSam.jar
- java-pkg_dolauncher
- dodoc README.md
-}
diff --git a/sci-biology/BlastToSam/metadata.xml b/sci-biology/BlastToSam/metadata.xml
deleted file mode 100644
index 5a3c7d51d..000000000
--- a/sci-biology/BlastToSam/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="github">AstrorEnales/BlastToSam</remote-id>
- </upstream>
-</pkgmetadata>
^ permalink raw reply related [flat|nested] 4+ messages in thread
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