From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 52D04139083 for ; Fri, 24 Nov 2017 21:37:19 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 74B8DE0D6F; Fri, 24 Nov 2017 21:37:18 +0000 (UTC) Received: from smtp.gentoo.org (dev.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 4A834E0D6F for ; Fri, 24 Nov 2017 21:37:17 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 305EF33BF43 for ; Fri, 24 Nov 2017 21:37:16 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id E3577A659 for ; Fri, 24 Nov 2017 21:37:14 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1511559415.0e960307417d5306f51c0d73c00c4a68cd47e529.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/kraken/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/kraken/kraken-0.10.5.ebuild sci-biology/kraken/kraken-1.0.ebuild X-VCS-Directories: sci-biology/kraken/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 0e960307417d5306f51c0d73c00c4a68cd47e529 X-VCS-Branch: master Date: Fri, 24 Nov 2017 21:37:14 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 5a3d3742-01af-4e33-95cd-4fbd644031bd X-Archives-Hash: cdbe88a1a38832d564d46a99d188fdd5 commit: 0e960307417d5306f51c0d73c00c4a68cd47e529 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Fri Nov 24 21:36:55 2017 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Fri Nov 24 21:36:55 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0e960307 sci-biology/kraken: version bump Package-Manager: Portage-2.3.14, Repoman-2.3.6 sci-biology/kraken/{kraken-0.10.5.ebuild => kraken-1.0.ebuild} | 10 ++++------ 1 file changed, 4 insertions(+), 6 deletions(-) diff --git a/sci-biology/kraken/kraken-0.10.5.ebuild b/sci-biology/kraken/kraken-1.0.ebuild similarity index 85% rename from sci-biology/kraken/kraken-0.10.5.ebuild rename to sci-biology/kraken/kraken-1.0.ebuild index d5fb4545e..b579a7eef 100644 --- a/sci-biology/kraken/kraken-0.10.5.ebuild +++ b/sci-biology/kraken/kraken-1.0.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 EAPI=5 @@ -9,8 +9,8 @@ inherit perl-module DESCRIPTION="Detect sequencing project contaminants by mapping reads to taxonomic groups" HOMEPAGE="http://ccb.jhu.edu/software/kraken http://genomebiology.com/2014/15/3/R46" -SRC_URI="http://ccb.jhu.edu/software/kraken/dl/kraken-0.10.5-beta.tgz - http://ccb.jhu.edu/software/kraken/MANUAL.html" +SRC_URI="https://github.com/DerrickWood/kraken/archive/v1.0.tar.gz -> ${P}.tar.gz + http://ccb.jhu.edu/software/kraken/MANUAL.html -> ${P}_MANUAL.html" LICENSE="GPL-3" SLOT="0" @@ -22,8 +22,6 @@ RDEPEND="${DEPEND} dev-lang/perl net-misc/wget" -S="${WORKDIR}"/kraken-0.10.5-beta - src_prepare(){ sed -e 's/^CXX = /CXX ?= /' -e 's/^CXXFLAGS = /CXXFLAGS ?= /' -i src/Makefile || die echo "exit 0" >> install_kraken.sh || die @@ -34,7 +32,7 @@ src_compile(){ } src_install(){ - dohtml "${DISTDIR}"/MANUAL.html + dohtml "${DISTDIR}"/${P}_MANUAL.html perl_set_version insinto ${VENDOR_LIB}/${PN} doins destdir/*.pm