From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id EAE611396D0 for ; Tue, 26 Sep 2017 05:08:21 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 358E32BC01D; Tue, 26 Sep 2017 05:08:21 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 0F00B2BC01D for ; Tue, 26 Sep 2017 05:08:20 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id B8142340BEA for ; Tue, 26 Sep 2017 05:08:19 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 7BFA7908D for ; Tue, 26 Sep 2017 05:08:18 +0000 (UTC) From: "Kent Fredric" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Kent Fredric" Message-ID: <1506402444.fe3bbbb5d658bf8673eba70e65f1b6b6de9d7c88.kentnl@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/hmmer/ X-VCS-Repository: repo/gentoo X-VCS-Files: sci-biology/hmmer/hmmer-2.3.2-r3.ebuild X-VCS-Directories: sci-biology/hmmer/ X-VCS-Committer: kentnl X-VCS-Committer-Name: Kent Fredric X-VCS-Revision: fe3bbbb5d658bf8673eba70e65f1b6b6de9d7c88 X-VCS-Branch: master Date: Tue, 26 Sep 2017 05:08:18 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: cd8ce3b1-47b8-4754-871e-433faaca055b X-Archives-Hash: b40f75db7b4775e5804c2a94cb2e2c35 commit: fe3bbbb5d658bf8673eba70e65f1b6b6de9d7c88 Author: Kent Fredric gentoo org> AuthorDate: Mon Sep 25 13:24:20 2017 +0000 Commit: Kent Fredric gentoo org> CommitDate: Tue Sep 26 05:07:24 2017 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fe3bbbb5 sci-biology/hmmer: Cleanup broken versions re bug #421799 Closes: https://bugs.gentoo.org/421799 Package-Manager: Portage-2.3.8, Repoman-2.3.3 sci-biology/hmmer/hmmer-2.3.2-r3.ebuild | 52 --------------------------------- 1 file changed, 52 deletions(-) diff --git a/sci-biology/hmmer/hmmer-2.3.2-r3.ebuild b/sci-biology/hmmer/hmmer-2.3.2-r3.ebuild deleted file mode 100644 index 0d1a357d4d0..00000000000 --- a/sci-biology/hmmer/hmmer-2.3.2-r3.ebuild +++ /dev/null @@ -1,52 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -DESCRIPTION="Sequence analysis using profile hidden Markov models" -LICENSE="GPL-2" -HOMEPAGE="http://hmmer.janelia.org/" -SRC_URI="ftp://ftp.genetics.wustl.edu/pub/eddy/${PN}/${PV}/${P}.tar.gz" - -SLOT="0" -IUSE="threads test" -KEYWORDS="~amd64 ~x86" - -DEPEND="" -RDEPEND="" - -src_configure() { - econf \ - --host=${CHOST} \ - --prefix="${D}"/usr \ - --exec_prefix="${D}"/usr \ - --mandir="${D}"/usr/share/man \ - --enable-lfs \ - $(use_enable threads) -} - -src_install() { - emake DESTDIR="${D}" install - - pushd src >/dev/null || die - dolib libhmmer.a - insinto /usr/include/hmmer - doins *.h - popd >/dev/null || die - - pushd squid >/dev/null || die - dobin afetch alistat compalign compstruct revcomp seqstat seqsplit sfetch shuffle sreformat sindex weight translate - dolib libsquid.a - insinto /usr/include/hmmer - doins *.h - popd >/dev/null || die - - dodoc NOTES - newdoc 00README README - insinto /usr/share/doc/${PF} - doins Userguide.pdf -} - -src_test() { - emake check -}