[gentoo-commits] proj/sci:master commit in: sci-biology/nxtrim/

[gentoo-commits] proj/sci:master commit in: sci-biology/nxtrim/

[Martin Mokrejs]

commit:     913af500bddad02b7fc4d975c80044272d54eefe
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Apr  6 23:07:22 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Apr  6 23:07:22 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=913af500

sci-biology/nxtrim: just opened an issue #32 with upstream

https://github.com/sequencing/NxTrim/issues/32

Package-Manager: Portage-2.3.5, Repoman-2.3.1

 sci-biology/nxtrim/nxtrim-9999.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/nxtrim/nxtrim-9999.ebuild b/sci-biology/nxtrim/nxtrim-9999.ebuild
index 856f63662..b71255f03 100644
--- a/sci-biology/nxtrim/nxtrim-9999.ebuild
+++ b/sci-biology/nxtrim/nxtrim-9999.ebuild
@@ -11,7 +11,7 @@ EGIT_REPO_URI="https://github.com/sequencing/NxTrim.git"
 
 LICENSE="BSD-2"
 SLOT="0"
-KEYWORDS=""
+KEYWORDS="" # https://github.com/sequencing/NxTrim/issues/32
 IUSE=""
 
 DEPEND=""

[gentoo-commits] proj/sci:master commit in: sci-biology/nxtrim/

[Martin Mokrejs]

commit:     575f04f3597dd07b5d6332be5300aacc0175b685
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Apr  6 23:18:13 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Apr  6 23:18:13 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=575f04f3

sci-biology/nxtrim: use proper protocol name

Package-Manager: Portage-2.3.5, Repoman-2.3.1

 sci-biology/nxtrim/nxtrim-9999.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/nxtrim/nxtrim-9999.ebuild b/sci-biology/nxtrim/nxtrim-9999.ebuild
index b71255f03..4eb879880 100644
--- a/sci-biology/nxtrim/nxtrim-9999.ebuild
+++ b/sci-biology/nxtrim/nxtrim-9999.ebuild
@@ -5,7 +5,7 @@ EAPI=6
 
 inherit git-r3 eutils
 
-DESCRIPTION="Trim Illumina TruSeq adapters and split reads by NEBnext MatePair linker"
+DESCRIPTION="Trim Illumina TruSeq adapters and split reads by Nextera MatePair linker"
 HOMEPAGE="https://github.com/sequencing/NxTrim"
 EGIT_REPO_URI="https://github.com/sequencing/NxTrim.git"
 

[gentoo-commits] proj/sci:master commit in: sci-biology/nxtrim/

[Andrew Ammerlaan]

commit:     af272af3acae1acbae751c484d550f1206679550
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar  6 13:04:01 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar  6 13:04:01 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=af272af3

sci-biology/nxtrim: EAPI bump, vers 0.4.3, fix install

Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 .../nxtrim/{nxtrim-9999.ebuild => nxtrim-0.4.3.ebuild} | 18 +++++++++---------
 1 file changed, 9 insertions(+), 9 deletions(-)

diff --git a/sci-biology/nxtrim/nxtrim-9999.ebuild b/sci-biology/nxtrim/nxtrim-0.4.3.ebuild
similarity index 54%
rename from sci-biology/nxtrim/nxtrim-9999.ebuild
rename to sci-biology/nxtrim/nxtrim-0.4.3.ebuild
index 9a12a0226..6ccd90101 100644
--- a/sci-biology/nxtrim/nxtrim-9999.ebuild
+++ b/sci-biology/nxtrim/nxtrim-0.4.3.ebuild
@@ -1,23 +1,23 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
-
-inherit git-r3 eutils
+EAPI=7
 
 DESCRIPTION="Trim Illumina TruSeq adapters and split reads by Nextera MatePair linker"
 HOMEPAGE="https://github.com/sequencing/NxTrim"
-EGIT_REPO_URI="https://github.com/sequencing/NxTrim.git"
+SRC_URI="https://github.com/sequencing/NxTrim/archive/v${PV}.tar.gz -> ${P}.tar.gz"
 
 LICENSE="BSD-2"
 SLOT="0"
-KEYWORDS="" # https://github.com/sequencing/NxTrim/issues/32
-IUSE=""
+KEYWORDS="~amd64"
 
 DEPEND=""
 RDEPEND="${DEPEND}"
 
+S="${WORKDIR}/NxTrim-${PV}"
+
 src_install(){
-	dobin nxtrim mergeReads
-	dodoc README.md
+	dobin nxtrim scripts/*
+	einstalldocs
+	dodoc -r docs/*
 }