[gentoo-commits] proj/sci:master commit in: sci-biology/jtreeview-bin/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     7edd503dc9baff0a0be17fb94f6a3e0d5b1538e6
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Feb 18 20:02:00 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Feb 18 20:02:00 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=7edd503d

sci-biology/jtreeview-bin: package using upstream's binary

Package-Manager: Portage-2.3.3, Repoman-2.3.1

 .../jtreeview-bin/jtreeview-bin-1.1.6.4.ebuild     | 44 ++++++++++++++++++++++
 sci-biology/jtreeview-bin/metadata.xml             | 12 ++++++
 2 files changed, 56 insertions(+)

diff --git a/sci-biology/jtreeview-bin/jtreeview-bin-1.1.6.4.ebuild b/sci-biology/jtreeview-bin/jtreeview-bin-1.1.6.4.ebuild
new file mode 100644
index 000000000..c85e2473e
--- /dev/null
+++ b/sci-biology/jtreeview-bin/jtreeview-bin-1.1.6.4.ebuild
@@ -0,0 +1,44 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PERL_EXPORT_PHASE_FUNCTIONS=no
+inherit java-pkg-2 java-ant-2 eutils perl-module
+
+S="${WORKDIR}"/TreeView-1.1.6r4-bin
+
+DESCRIPTION="Viewer for Microarray Data in PCL or CDT formats"
+HOMEPAGE="http://jtreeview.sourceforge.net/"
+SRC_URI="
+	http://sourceforge.net/projects/jtreeview/files/jtreeview/1.1.6r4/TreeView-1.1.6r4-bin.tar.gz
+	http://sourceforge.net/projects/jtreeview/files/helper-scripts/0.0.2/helper-scripts-0.0.2.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="" # src_install is wrong somehow, TreeView.jar does not start
+IUSE=""
+
+DEPEND="
+	>virtual/jdk-1.5:*
+	!sci-biology/jtreeview"
+RDEPEND="${DEPEND}
+	>=virtual/jre-1.5:*"
+
+# TODO: use xltproc to create docs following TreeView-1.1.6r4-src/doc/README
+
+src_install(){
+	java-pkg_dojar TreeView.jar
+	java-pkg_dolauncher ${PN} TreeView.jar
+	insinto /usr/share/"${PN}"/lib/plugins
+	doins plugins/*.jar
+	cd ../helper-scripts-0.0.2 || die
+	perl_set_version
+	insinto "${VENDOR_LIB}"
+	doins *.pm
+	dobin *.pl
+	insinto /usr/share/"${PN}"/examples
+	doins blues.color
+	newdoc README README.helper-scripts
+}

diff --git a/sci-biology/jtreeview-bin/metadata.xml b/sci-biology/jtreeview-bin/metadata.xml
new file mode 100644
index 000000000..f68a1b6fa
--- /dev/null
+++ b/sci-biology/jtreeview-bin/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci-biology@gentoo.org</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>