From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id C2437139085 for ; Wed, 8 Feb 2017 11:36:46 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 1F48421C028; Wed, 8 Feb 2017 11:36:41 +0000 (UTC) Received: from smtp.gentoo.org (mail.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 00ACF21C028 for ; Wed, 8 Feb 2017 11:36:40 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id F13AE3416AE for ; Wed, 8 Feb 2017 11:36:39 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 4A1F23D9B for ; Wed, 8 Feb 2017 11:36:37 +0000 (UTC) From: "Johannes Huber" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Johannes Huber" Message-ID: <1486553787.c6ab3d3efa5f0b10bc6070967a2f435156488b32.johu@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/express/ X-VCS-Repository: repo/gentoo X-VCS-Files: sci-biology/express/express-0.9.5.ebuild X-VCS-Directories: sci-biology/express/ X-VCS-Committer: johu X-VCS-Committer-Name: Johannes Huber X-VCS-Revision: c6ab3d3efa5f0b10bc6070967a2f435156488b32 X-VCS-Branch: master Date: Wed, 8 Feb 2017 11:36:37 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 66b78aff-64f5-4e66-841e-8648f2e63081 X-Archives-Hash: b7bc297f27fb7422213c6272b00e25ea commit: c6ab3d3efa5f0b10bc6070967a2f435156488b32 Author: Johannes Huber gentoo org> AuthorDate: Wed Feb 8 11:35:54 2017 +0000 Commit: Johannes Huber gentoo org> CommitDate: Wed Feb 8 11:36:27 2017 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c6ab3d3e sci-biology/express: Remove 0.9.5 (r0) Package-Manager: Portage-2.3.3, Repoman-2.3.1 sci-biology/express/express-0.9.5.ebuild | 35 -------------------------------- 1 file changed, 35 deletions(-) diff --git a/sci-biology/express/express-0.9.5.ebuild b/sci-biology/express/express-0.9.5.ebuild deleted file mode 100644 index a4fcff4be4..0000000000 --- a/sci-biology/express/express-0.9.5.ebuild +++ /dev/null @@ -1,35 +0,0 @@ -# Copyright 1999-2012 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=4 - -inherit cmake-utils - -DESCRIPTION="Streaming RNA-Seq Analysis" -HOMEPAGE="http://bio.math.berkeley.edu/eXpress/" -SRC_URI="http://bio.math.berkeley.edu/eXpress/downloads/express-${PV}/express-${PV}-src.tgz" - -LICENSE="Artistic" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -DEPEND=" - dev-libs/boost - sys-libs/zlib - sci-biology/bamtools" -RDEPEND="${DEPEND}" - -S="${WORKDIR}/${P}-src" - -CMAKE_USE_DIR="${S}/src" - -src_prepare() { - sed \ - -e 's|"${CMAKE_CURRENT_SOURCE_DIR}/../bamtools/lib/libbamtools.a"|bamtools|' \ - -e '1 a find_package(Boost 1.46 COMPONENTS filesystem program_options thread)' \ - -e '1 a find_package(ZLIB)' \ - -e '/add_executable/ a include_directories("/usr/include/bamtools")' \ - -i src/CMakeLists.txt || die -}