From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 5B078139085 for ; Tue, 24 Jan 2017 18:35:34 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id A75432241B0; Tue, 24 Jan 2017 18:35:33 +0000 (UTC) Received: from smtp.gentoo.org (mail.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 842C22241B0 for ; Tue, 24 Jan 2017 18:35:32 +0000 (UTC) Received: from oystercatcher.gentoo.org (unknown [IPv6:2a01:4f8:202:4333:225:90ff:fed9:fc84]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 2D22E341293 for ; Tue, 24 Jan 2017 18:35:32 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id E94C02DF6 for ; Tue, 24 Jan 2017 18:35:30 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1485282915.1bd613187ee8a70163d0d21bbe5ea726f53c5490.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/picard/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/picard/picard-9999.ebuild X-VCS-Directories: sci-biology/picard/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 1bd613187ee8a70163d0d21bbe5ea726f53c5490 X-VCS-Branch: master Date: Tue, 24 Jan 2017 18:35:30 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 1e427a39-d27e-42ba-bdc4-9a043791f826 X-Archives-Hash: aecec1961f65656fbb23e3fd6909cfc2 commit: 1bd613187ee8a70163d0d21bbe5ea726f53c5490 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Tue Jan 24 18:35:15 2017 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Tue Jan 24 18:35:15 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1bd61318 sci-biology/picard-9999: apply the 2.2.2 patch to drop bundled htsjdk This is probably not needed as currently it uses gradlew to build but the patch still applies to build.xml and maybe somebody will manage to resurrect the ant-based build process. Package-Manager: Portage-2.3.3, Repoman-2.3.1 sci-biology/picard/picard-9999.ebuild | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sci-biology/picard/picard-9999.ebuild b/sci-biology/picard/picard-9999.ebuild index e3f22b9..ccc0062 100644 --- a/sci-biology/picard/picard-9999.ebuild +++ b/sci-biology/picard/picard-9999.ebuild @@ -38,7 +38,7 @@ EANT_GENTOO_CLASSPATH="snappy-1.1,cofoja,commons-jexl-2,ant-core,htsjdk" java_prepare() { default - epatch "${FILESDIR}"/${PV}-build.xml.patch + epatch "${FILESDIR}"/2.2.2-build.xml.patch } src_compile(){