[gentoo-commits] proj/sci:master commit in: sci-biology/igv/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     28e8a88f0ac87bef716fbdb68dcdd52439980236
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Nov  8 19:25:26 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Nov  8 19:25:26 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=28e8a88f

sci-biology/igv: fix DEPS so that ebuild+repoman are happy (but emerge complains)

Package-Manager: portage-2.3.0

 sci-biology/igv/igv-2.3.81.ebuild                      | 18 +++++++++---------
 .../igv/{igv-2.3.81.ebuild => igv-2.3.88.ebuild}       | 18 +++++++++---------
 2 files changed, 18 insertions(+), 18 deletions(-)

diff --git a/sci-biology/igv/igv-2.3.81.ebuild b/sci-biology/igv/igv-2.3.81.ebuild
index 99407f6..b7c3b3d 100644
--- a/sci-biology/igv/igv-2.3.81.ebuild
+++ b/sci-biology/igv/igv-2.3.81.ebuild
@@ -32,22 +32,22 @@ KEYWORDS="" # igv-2.3.81/src/com/iontorrent/views/FlowSignalDistributionPanel.ja
 # actually more exactly the COMMON_DEPS should contain:
 #   >=dev-java/commons-compress-1.11 # use bundled library until dev-java/commons-compress is bumped, see bug #591696
 COMMON_DEPS="
-	dev-java/absolutelayout
+	dev-java/absolutelayout:0
 	dev-java/jama:0
 	dev-java/commons-compress
 	dev-java/commons-logging:0
 	>=dev-java/commons-io-2.1:1
-	dev-java/commons-math:2
-	dev-java/commons-jexl:2
-	dev-java/jcommon:1.0
-	dev-java/jfreechart:1.0
+	dev-java/commons-math:*
+	dev-java/commons-jexl:*
+	dev-java/jcommon:*
+	dev-java/jfreechart:*
 	dev-java/jlfgr:0
 	dev-java/log4j:0
-	dev-java/gson:2.2.2
-	dev-java/guava:*
-	dev-java/swing-layout:1
+	dev-java/gson:*
+	>=dev-java/guava-17:*
+	dev-java/swing-layout:*
 	dev-java/jgrapht:0
-	dev-java/junit:4"
+	dev-java/junit:0"
 
 DEPEND=">=virtual/jdk-1.7
 	app-arch/unzip

diff --git a/sci-biology/igv/igv-2.3.81.ebuild b/sci-biology/igv/igv-2.3.88.ebuild
similarity index 88%
copy from sci-biology/igv/igv-2.3.81.ebuild
copy to sci-biology/igv/igv-2.3.88.ebuild
index 99407f6..2a03eac 100644
--- a/sci-biology/igv/igv-2.3.81.ebuild
+++ b/sci-biology/igv/igv-2.3.88.ebuild
@@ -27,27 +27,27 @@ HOMEPAGE="http://www.broadinstitute.org/igv/"
 LICENSE="LGPL-2.1"
 SLOT="0"
 IUSE=""
-KEYWORDS="" # igv-2.3.81/src/com/iontorrent/views/FlowSignalDistributionPanel.java:222: error: cannot access PublicCloneable
+KEYWORDS="" # see upstream issue #332
 
 # actually more exactly the COMMON_DEPS should contain:
 #   >=dev-java/commons-compress-1.11 # use bundled library until dev-java/commons-compress is bumped, see bug #591696
 COMMON_DEPS="
-	dev-java/absolutelayout
+	dev-java/absolutelayout:0
 	dev-java/jama:0
 	dev-java/commons-compress
 	dev-java/commons-logging:0
 	>=dev-java/commons-io-2.1:1
-	dev-java/commons-math:2
-	dev-java/commons-jexl:2
-	dev-java/jcommon:1.0
-	dev-java/jfreechart:1.0
+	dev-java/commons-math:*
+	dev-java/commons-jexl:*
+	dev-java/jcommon:*
+	dev-java/jfreechart:*
 	dev-java/jlfgr:0
 	dev-java/log4j:0
-	dev-java/gson:2.2.2
+	dev-java/gson:*
 	dev-java/guava:*
-	dev-java/swing-layout:1
+	dev-java/swing-layout:*
 	dev-java/jgrapht:0
-	dev-java/junit:4"
+	dev-java/junit:*"
 
 DEPEND=">=virtual/jdk-1.7
 	app-arch/unzip