From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 2F26B138306 for ; Thu, 14 Jul 2016 18:42:44 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 9CA0C21C0A3; Thu, 14 Jul 2016 18:42:38 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 4992A21C0A3 for ; Thu, 14 Jul 2016 18:42:37 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 6B0C6340A9E for ; Thu, 14 Jul 2016 18:42:36 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id E1558241A for ; Thu, 14 Jul 2016 18:42:34 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1468521726.ec639407519c52105c86906c2909ecbeb3a25665.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-libs/libmaus2/ X-VCS-Repository: proj/sci X-VCS-Files: sci-libs/libmaus2/libmaus2-9999.ebuild sci-libs/libmaus2/metadata.xml X-VCS-Directories: sci-libs/libmaus2/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: ec639407519c52105c86906c2909ecbeb3a25665 X-VCS-Branch: master Date: Thu, 14 Jul 2016 18:42:34 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 946bce64-3453-41c6-bdd9-7ed6101ec5f7 X-Archives-Hash: 7693e03c731a530211d9587ced64b991 commit: ec639407519c52105c86906c2909ecbeb3a25665 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Thu Jul 14 18:42:06 2016 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Thu Jul 14 18:42:06 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ec639407 sci-libs/libmaus2: new package although a version bump of sci-libs/libmaus I think this and the parental libmaus package will need a fix on the LICENSE line (they are not only GPL-v3). Package-Manager: portage-2.2.28 sci-libs/libmaus2/libmaus2-9999.ebuild | 27 +++++++++++++++++++++++++++ sci-libs/libmaus2/metadata.xml | 20 ++++++++++++++++++++ 2 files changed, 47 insertions(+) diff --git a/sci-libs/libmaus2/libmaus2-9999.ebuild b/sci-libs/libmaus2/libmaus2-9999.ebuild new file mode 100644 index 0000000..ae02d15 --- /dev/null +++ b/sci-libs/libmaus2/libmaus2-9999.ebuild @@ -0,0 +1,27 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +inherit autotools git-r3 + +DESCRIPTION="Library for biobambam" +HOMEPAGE="https://github.com/gt1/libmaus" +EGIT_REPO_URI="https://github.com/gt1/libmaus2.git" + +LICENSE="GPL-3" # BUG: a mix of licenses, see AUTHORS +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND=" + !sci-libs/libmaus + sci-libs/io_lib + app-arch/snappy + sci-biology/seqan" + +src_prepare() { + eautoreconf + eapply_user +} diff --git a/sci-libs/libmaus2/metadata.xml b/sci-libs/libmaus2/metadata.xml new file mode 100644 index 0000000..1541e62 --- /dev/null +++ b/sci-libs/libmaus2/metadata.xml @@ -0,0 +1,20 @@ + + + + + sci-biology@gentoo.org + Gentoo Biology Project + + +libmaus is a collection of data structures and algorithms. It contains + +I/O classes (single byte and UTF-8) + bitio classes (input, output and various forms of bit level manipulation) + text indexing classes (suffix and LCP array, fulltext and minute (FM), ...) + BAM sequence alignment files input/output (simple and collating) + and many lower level support classes. + + + gt1/libmaus + +