* [gentoo-commits] proj/sci:master commit in: sci-biology/fgap/
@ 2016-03-23 19:00 Martin Mokrejs
0 siblings, 0 replies; 4+ messages in thread
From: Martin Mokrejs @ 2016-03-23 19:00 UTC (permalink / raw
To: gentoo-commits
commit: 91ae72dccfc97eb347ae0e04c9530d1b76d1acbe
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Mar 23 19:00:16 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Mar 23 19:00:16 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=91ae72dc
sci-biology/fgap: new package which needs either octave or matlab runtime
Package-Manager: portage-2.2.26
sci-biology/fgap/fgap-1.8.1.ebuild | 26 ++++++++++++++++++++++++++
sci-biology/fgap/metadata.xml | 12 ++++++++++++
2 files changed, 38 insertions(+)
diff --git a/sci-biology/fgap/fgap-1.8.1.ebuild b/sci-biology/fgap/fgap-1.8.1.ebuild
new file mode 100644
index 0000000..65430e9
--- /dev/null
+++ b/sci-biology/fgap/fgap-1.8.1.ebuild
@@ -0,0 +1,26 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Tool to close gaps in de novo assembled contigs or scaffolds"
+HOMEPAGE="http://www.bioinfo.ufpr.br/fgap"
+SRC_URI="https://sourceforge.net/projects/fgap/files/fgap.m"
+# http://bmcresnotes.biomedcentral.com/articles/10.1186/1756-0500-7-371
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+# Matlab (R2012a) or Octave (3.6.2)
+#
+# Source code (Octave/Matlab): https://sourceforge.net/projects/fgap/files/fgap.m
+
+# MATLAB Component Runtime v7.17: https://sourceforge.net/projects/fgap/files/MCR_LINUX64b.tar.gz
+# http://www.mathworks.com/products/compiler/mcr/index.html
+DEPEND=""
+RDEPEND="${DEPEND}
+ >=sci-biology/ncbi-tools+-2.2.28
+ >=sci-mathematics/octave-3.6.2"
diff --git a/sci-biology/fgap/metadata.xml b/sci-biology/fgap/metadata.xml
new file mode 100644
index 0000000..f68a1b6
--- /dev/null
+++ b/sci-biology/fgap/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci-biology@gentoo.org</email>
+ <name>Gentoo Biology Project</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/fgap/
@ 2016-03-25 9:14 Martin Mokrejs
0 siblings, 0 replies; 4+ messages in thread
From: Martin Mokrejs @ 2016-03-25 9:14 UTC (permalink / raw
To: gentoo-commits
commit: 0bf494d41f0a6155f1ef256cb93097b197718d44
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Mar 25 09:13:40 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Mar 25 09:13:40 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0bf494d4
sci-biology/fgap: fix typo in a package name
Package-Manager: portage-2.2.26
sci-biology/fgap/fgap-1.8.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/fgap/fgap-1.8.1.ebuild b/sci-biology/fgap/fgap-1.8.1.ebuild
index 65430e9..1660589 100644
--- a/sci-biology/fgap/fgap-1.8.1.ebuild
+++ b/sci-biology/fgap/fgap-1.8.1.ebuild
@@ -22,5 +22,5 @@ IUSE=""
# http://www.mathworks.com/products/compiler/mcr/index.html
DEPEND=""
RDEPEND="${DEPEND}
- >=sci-biology/ncbi-tools+-2.2.28
+ >=sci-biology/ncbi-tools-2.2.28
>=sci-mathematics/octave-3.6.2"
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/fgap/
@ 2016-03-30 14:41 Martin Mokrejs
0 siblings, 0 replies; 4+ messages in thread
From: Martin Mokrejs @ 2016-03-30 14:41 UTC (permalink / raw
To: gentoo-commits
commit: b327ce7d38ec6229d0e4bd520cbe36dc65af5f0e
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Mar 30 14:39:16 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Mar 30 14:39:16 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b327ce7d
fixing /# : $/# $/
Package-Manager: portage-2.2.28
sci-biology/fgap/fgap-1.8.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/fgap/fgap-1.8.1.ebuild b/sci-biology/fgap/fgap-1.8.1.ebuild
index 1660589..fc5245b 100644
--- a/sci-biology/fgap/fgap-1.8.1.ebuild
+++ b/sci-biology/fgap/fgap-1.8.1.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: $
+# $Id$
EAPI=5
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/fgap/
@ 2020-09-27 10:42 Horea Christian
0 siblings, 0 replies; 4+ messages in thread
From: Horea Christian @ 2020-09-27 10:42 UTC (permalink / raw
To: gentoo-commits
commit: 84c51b086a4e18769bfc26a05f0a3c13b09f2da7
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sun Sep 27 10:41:52 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Sep 27 10:41:52 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=84c51b08
sci-biology/fgap: removed discontinued package
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/fgap/fgap-1.8.1.ebuild | 25 -------------------------
sci-biology/fgap/metadata.xml | 15 ---------------
2 files changed, 40 deletions(-)
diff --git a/sci-biology/fgap/fgap-1.8.1.ebuild b/sci-biology/fgap/fgap-1.8.1.ebuild
deleted file mode 100644
index 9b34575db..000000000
--- a/sci-biology/fgap/fgap-1.8.1.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-DESCRIPTION="Tool to close gaps in de novo assembled contigs or scaffolds"
-HOMEPAGE="http://www.bioinfo.ufpr.br/fgap"
-SRC_URI="https://sourceforge.net/projects/fgap/files/fgap.m"
-# http://bmcresnotes.biomedcentral.com/articles/10.1186/1756-0500-7-371
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-# Matlab (R2012a) or Octave (3.6.2)
-#
-# Source code (Octave/Matlab): https://sourceforge.net/projects/fgap/files/fgap.m
-
-# MATLAB Component Runtime v7.17: https://sourceforge.net/projects/fgap/files/MCR_LINUX64b.tar.gz
-# http://www.mathworks.com/products/compiler/mcr/index.html
-DEPEND=""
-RDEPEND="${DEPEND}
- >=sci-biology/ncbi-tools-2.2.28
- >=sci-mathematics/octave-3.6.2"
diff --git a/sci-biology/fgap/metadata.xml b/sci-biology/fgap/metadata.xml
deleted file mode 100644
index b53e13d28..000000000
--- a/sci-biology/fgap/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="sourceforge">fgap</remote-id>
- </upstream>
-</pkgmetadata>
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