public inbox for gentoo-commits@lists.gentoo.org
 help / color / mirror / Atom feed
From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/TransDecoder/
Date: Thu, 19 Nov 2015 20:56:19 +0000 (UTC)	[thread overview]
Message-ID: <1447966508.8bb47dd4462917d5054c9e4e43b063e1f0db5c95.mmokrejs@gentoo> (raw)

commit:     8bb47dd4462917d5054c9e4e43b063e1f0db5c95
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Nov 19 20:55:08 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Nov 19 20:55:08 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=8bb47dd4

sci-biology/TransDecoder: note that Pfam-AB was discontinued

Package-Manager: portage-2.2.18

 sci-biology/TransDecoder/ChangeLog                 | 4 ++++
 sci-biology/TransDecoder/TransDecoder-2.0.1.ebuild | 6 +++---
 2 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/sci-biology/TransDecoder/ChangeLog b/sci-biology/TransDecoder/ChangeLog
index 2445e83..ee19193 100644
--- a/sci-biology/TransDecoder/ChangeLog
+++ b/sci-biology/TransDecoder/ChangeLog
@@ -4,6 +4,10 @@
 
   19 Nov 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
   TransDecoder-2.0.1.ebuild:
+  sci-biology/TransDecoder: note that Pfam-AB was discontinued
+
+  19 Nov 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  TransDecoder-2.0.1.ebuild:
   sci-biology/TransDecoder: update homepage
 
   19 Nov 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

diff --git a/sci-biology/TransDecoder/TransDecoder-2.0.1.ebuild b/sci-biology/TransDecoder/TransDecoder-2.0.1.ebuild
index bac0a96..113c915 100644
--- a/sci-biology/TransDecoder/TransDecoder-2.0.1.ebuild
+++ b/sci-biology/TransDecoder/TransDecoder-2.0.1.ebuild
@@ -70,9 +70,9 @@ src_install(){
 	insinto ${VENDOR_LIB}/${PN}
 	doins PerlLib/*.pm
 	dodoc Release.Notes
-	einfo "Fetch on your own:"
-	einfo "wget --mirror -nH -nd http://downloads.sourceforge.net/project/transdecoder/Pfam-AB.hmm.bin"
-	einfo "hmmpress Pfam-AB.hmm.bin"
+	einfo "Fetch on your own Pfam-A.hmm (Pfam-AB.hmm is discontinued since 05/2015):"
+	einfo "wget --mirror -nH -nd ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam-A.hmm.gz"
+	einfo "hmmpress Pfam-A.hmm.bin"
 }
 
 pkg_postinst(){


             reply	other threads:[~2015-11-19 20:56 UTC|newest]

Thread overview: 15+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2015-11-19 20:56 Martin Mokrejs [this message]
  -- strict thread matches above, loose matches on Subject: below --
2021-01-19 16:26 [gentoo-commits] proj/sci:master commit in: sci-biology/TransDecoder/ Andrew Ammerlaan
2016-07-11  9:11 Martin Mokrejs
2015-12-25 21:00 Marius Brehler
2015-11-19 20:35 Martin Mokrejs
2015-06-06 10:23 Justin Lecher
2015-04-27 13:04 [gentoo-commits] proj/sci:master commit in: sci-biology/transdecoder/ Martin Mokrejs
2015-04-27 12:49 Martin Mokrejs
2015-04-27 12:48 Martin Mokrejs
2015-04-17 22:21 Martin Mokrejs
2015-03-19 10:47 Martin Mokrejs
2015-03-19 10:37 Martin Mokrejs
2015-02-15 16:57 Martin Mokrejs
2015-01-10  1:18 Martin Mokrejs
2015-01-08 22:35 Martin Mokrejs

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=1447966508.8bb47dd4462917d5054c9e4e43b063e1f0db5c95.mmokrejs@gentoo \
    --to=mmokrejs@fold.natur.cuni.cz \
    --cc=gentoo-commits@lists.gentoo.org \
    --cc=gentoo-dev@lists.gentoo.org \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox