[gentoo-commits] repo/gentoo:master commit in: sci-visualization/paraview/files/, sci-visualization/paraview/

["Matthias Maier" <tamiko@gentoo.org>]

commit:     781fdf38053da604fcb269c354ad3cd86bd0e0ec
Author:     Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Sun Sep 20 03:03:17 2015 +0000
Commit:     Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Sun Sep 20 03:04:09 2015 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=781fdf38

sci-visualization/paraview: Only keep version 4.3.1

Package-Manager: portage-2.2.20.1

 sci-visualization/paraview/Manifest                |   2 -
 .../paraview/files/paraview-4.0.1-Protobuf.patch   |  72 ---
 .../files/paraview-4.0.1-removesqlite.patch        | 517 ---------------------
 .../files/paraview-4.0.1-vtk-cg-path.patch         |  36 --
 .../paraview/files/paraview-4.0.1-vtknetcd.patch   |  79 ----
 .../files/paraview-4.1.0-glxext-legacy.patch       |   9 -
 .../files/paraview-4.1.0-vtk-freetype.patch        |  22 -
 .../paraview/paraview-4.1.0-r2.ebuild              | 302 ------------
 .../paraview/paraview-4.2.0-r1.ebuild              | 300 ------------
 9 files changed, 1339 deletions(-)

diff --git a/sci-visualization/paraview/Manifest b/sci-visualization/paraview/Manifest
index 98844ec..0ce9e37 100644
--- a/sci-visualization/paraview/Manifest
+++ b/sci-visualization/paraview/Manifest
@@ -1,3 +1 @@
-DIST ParaView-v4.1.0-source.tar.gz 50460304 SHA256 80ef898c158d7fd9ceb0bcd83be1f679eef06ce4f20514a2435330cc97a3fdf3 SHA512 da91f7332a91746d60968a9d6cc1fe4878a3710f8e4a3d675dc65c337d6844f39df4c3e307d424ee0d2a832fd3c0f3d0c4da6a8b0a2aa6902920988fb53b9f7f WHIRLPOOL c3572d12f05b8443eb21a342c140d55e3c41e2af383aa850491aaeec412e62a45a4ee44e6d772dc9b6f141028911cb96b22a7818c6f15bc80bb8553d37008d96
-DIST ParaView-v4.2.0-source.tar.gz 50285547 SHA256 ac26cc5fe5ce82d27531727a01242353d40984826eaa580edea0791887a07b6b SHA512 611f641ccaa62b285c595df0318da94a9e0e67a1c3040f60c33bdd32bf980db8371c84958c9d5f3191cfd5249969a60f51f8e5dfa9bd234c96ec51caecdb37c8 WHIRLPOOL 1c81a95e00f06b3c60e31c82aa6e87979c6d9b8000ca7298904d8c3f09df58153f6dde7b96df5f538a991f5764862d3059d1395db61f12464306d3c3fe919fe7
 DIST ParaView-v4.3.1-source.tar.gz 50842525 SHA256 d534c475fc052215ecadf4ad19d9c7996c634b5d965951292b966710509a2542 SHA512 73c17f7ba757647869b26992c0ac3a6b9298bce9d2b8c2fca28286064f2b83a29753028a29c6f478654fffc96c9d9f5dd638c64df2b05ded425da122109d31e3 WHIRLPOOL 3db1d02db95acf16f29c4784714985e4f6f7a32fbdf7fa58ad85ecfaf6ab60d7959ea3d5a3ab5d36739e56f1ee5b025d9b6275749966b576324629f14e96bde0

diff --git a/sci-visualization/paraview/files/paraview-4.0.1-Protobuf.patch b/sci-visualization/paraview/files/paraview-4.0.1-Protobuf.patch
deleted file mode 100644
index 6a09a1a..0000000
--- a/sci-visualization/paraview/files/paraview-4.0.1-Protobuf.patch
+++ /dev/null
@@ -1,72 +0,0 @@
-http://paraview.org/Bug/view.php?id=13656
-
-diff -up ParaView/ParaViewCore/ServerImplementation/Core/CMakeLists.txt.Protobuf ParaView/ParaViewCore/ServerImplementation/Core/CMakeLists.txt
---- ParaView/ParaViewCore/ServerImplementation/Core/CMakeLists.txt.Protobuf	2012-11-08 07:51:51.000000000 -0700
-+++ ParaView/ParaViewCore/ServerImplementation/Core/CMakeLists.txt	2012-11-13 15:17:53.980027098 -0700
-@@ -81,16 +81,24 @@
- #------------------------------------------------------------------------------
- # Generate the protbuf message file.
- #------------------------------------------------------------------------------
--get_target_property(PROTOC_LOCATION protoc_compiler LOCATION)
-+if (VTK_USE_SYSTEM_PROTOBUF)
-+	set (_PROTOC_COMPILER protoc)
-+	set (_PROTOC_DEPEND "")
-+else()
-+	set (_PROTOC_COMPILER protoc_compiler)
-+	set (_PROTOC_DEPEND ${_PROTOC_COMPILER})
-+endif()
-+
-+get_target_property(PROTOC_LOCATION ${_PROTOC_COMPILER} LOCATION)
- add_custom_command(
-     OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/vtkPVMessage.pb.h
-            ${CMAKE_CURRENT_BINARY_DIR}/vtkPVMessage.pb.cc
-     
--    COMMAND protoc_compiler
-+    COMMAND ${_PROTOC_COMPILER}
-            "--cpp_out=dllexport_decl=VTKPVSERVERIMPLEMENTATIONCORE_EXPORT:${CMAKE_CURRENT_BINARY_DIR}"
-            --proto_path "@CMAKE_CURRENT_SOURCE_DIR@"
-            "${CMAKE_CURRENT_SOURCE_DIR}/vtkPVMessage.proto"
--    DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/vtkPVMessage.proto protoc_compiler
-+    DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/vtkPVMessage.proto ${_PROTOC_DEPEND}
-     WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
- )
- 
-@@ -109,5 +117,9 @@
- vtk_module_library(vtkPVServerImplementationCore
-   ${Module_SRCS})
- 
-+if (VTK_USE_SYSTEM_PROTOBUF)
-+	target_link_libraries(vtkPVServerImplementationCore ${CMAKE_THREAD_LIBS_INIT})
-+endif()
-+
- add_dependencies(vtkPVServerImplementationCore
-   protobuf_code_generation)
-diff -up ParaView/ThirdParty/protobuf/CMakeLists.txt.Protobuf ParaView/ThirdParty/protobuf/CMakeLists.txt
---- ParaView/ThirdParty/protobuf/CMakeLists.txt.Protobuf	2012-11-08 07:51:51.000000000 -0700
-+++ ParaView/ThirdParty/protobuf/CMakeLists.txt	2012-11-13 15:09:31.526673020 -0700
-@@ -34,7 +34,7 @@
- set (PROTOBUF_INSTALL_LIB_DIR ${VTK_INSTALL_LIBRARY_DIR})
- set (PROTOBUF_INSTALL_EXPORT_NAME ${VTK_INSTALL_EXPORT_NAME})
- 
--vtk_module_third_party(protobuf
-+vtk_module_third_party(Protobuf
-   INCLUDE_DIRS ${CMAKE_CURRENT_SOURCE_DIR}/vtkprotobuf/src
-   LIBRARIES protobuf
- )
-@@ -42,10 +42,12 @@
- # protobuf exports it's build-dir targets to a custom file
- # (PROTOBUF_EXPORTS.cmake). We don't care much about that. We export
- # build-dir targets ourselves.
--vtk_target_export(protobuf)
--vtk_target_export(protobuf-lite)
--if (NOT CMAKE_CROSSCOMPILING)
--  vtk_compile_tools_target_export(protoc_compiler)
-+if (NOT VTK_USE_SYSTEM_PROTOBUF)
-+  vtk_target_export(protobuf)
-+  vtk_target_export(protobuf-lite)
-+  if (NOT CMAKE_CROSSCOMPILING)
-+    vtk_compile_tools_target_export(protoc_compiler)
-+  endif()
- endif()
- 
- # All these exports don't add any install rules. However we make protobuf itself

diff --git a/sci-visualization/paraview/files/paraview-4.0.1-removesqlite.patch b/sci-visualization/paraview/files/paraview-4.0.1-removesqlite.patch
deleted file mode 100644
index be495b4..0000000
--- a/sci-visualization/paraview/files/paraview-4.0.1-removesqlite.patch
+++ /dev/null
@@ -1,517 +0,0 @@
-Description: Import patch from VTK to remove sqlite
-Author: Mathieu Malaterre <mathieu.malaterre@gmail.com>
-Last-Update: Mon Feb 11 14:58:03 UTC 2013
-
-remove the internal copy of sqlite (vtksqlite)
-http://patch-tracker.debian.org/patch/series/view/paraview/3.14.1-7/removesqlite.patch
-
---- VTK/IO/SQL/vtkSQLiteDatabase.cxx
-+++ VTK/IO/SQL/vtkSQLiteDatabase.cxx
-@@ -29,7 +29,7 @@
- #include <vtksys/ios/fstream>
- #include <vtksys/ios/sstream>
- 
--#include <vtksqlite/vtk_sqlite3.h>
-+#include <sqlite3.h>
- 
- vtkStandardNewMacro(vtkSQLiteDatabase);
- 
-@@ -307,15 +307,15 @@
-       }
-     }
- 
--  int result = vtk_sqlite3_open(this->DatabaseFileName, & (this->SQLiteInstance));
-+  int result = sqlite3_open(this->DatabaseFileName, & (this->SQLiteInstance));
- 
--  if (result != VTK_SQLITE_OK)
-+  if (result != SQLITE_OK)
-     {
-     vtkDebugMacro(<<"SQLite open() failed.  Error code is "
-                   << result << " and message is "
--                  << vtk_sqlite3_errmsg(this->SQLiteInstance) );
-+                  << sqlite3_errmsg(this->SQLiteInstance) );
- 
--    vtk_sqlite3_close(this->SQLiteInstance);
-+    sqlite3_close(this->SQLiteInstance);
-     return false;
-     }
-   else
-@@ -334,8 +334,8 @@
-     }
-   else
-     {
--    int result = vtk_sqlite3_close(this->SQLiteInstance);
--    if (result != VTK_SQLITE_OK)
-+    int result = sqlite3_close(this->SQLiteInstance);
-+    if (result != SQLITE_OK)
-       {
-       vtkWarningMacro(<< "Close(): SQLite returned result code " << result);
-       }
-@@ -374,7 +374,7 @@
-   if (!status)
-     {
-     vtkErrorMacro(<< "GetTables(): Database returned error: "
--                  << vtk_sqlite3_errmsg(this->SQLiteInstance) );
-+                  << sqlite3_errmsg(this->SQLiteInstance) );
-     query->Delete();
-     return this->Tables;
-     }
-@@ -403,7 +403,7 @@
-   if (!status)
-     {
-     vtkErrorMacro(<< "GetRecord(" << table << "): Database returned error: "
--                  << vtk_sqlite3_errmsg(this->SQLiteInstance) );
-+                  << sqlite3_errmsg(this->SQLiteInstance) );
-     query->Delete();
-     return NULL;
-     }
-@@ -467,10 +467,10 @@
- // ----------------------------------------------------------------------
- bool vtkSQLiteDatabase::HasError()
- {
--  return (vtk_sqlite3_errcode(this->SQLiteInstance)!=VTK_SQLITE_OK);
-+  return (sqlite3_errcode(this->SQLiteInstance)!=SQLITE_OK);
- }
- 
- const char* vtkSQLiteDatabase::GetLastErrorText()
- {
--  return vtk_sqlite3_errmsg(this->SQLiteInstance);
-+  return sqlite3_errmsg(this->SQLiteInstance);
- }
---- VTK/IO/SQL/vtkSQLiteQuery.cxx
-+++ VTK/IO/SQL/vtkSQLiteQuery.cxx
-@@ -25,7 +25,7 @@
- #include "vtkVariant.h"
- #include "vtkVariantArray.h"
- 
--#include <vtksqlite/vtk_sqlite3.h>
-+#include <sqlite3.h>
- 
- #include <assert.h>
- 
-@@ -43,7 +43,7 @@
- {
-   this->Statement = NULL;
-   this->InitialFetch = true;
--  this->InitialFetchResult=VTK_SQLITE_DONE;
-+  this->InitialFetchResult=SQLITE_DONE;
-   this->LastErrorText = NULL;
-   this->TransactionInProgress = false;
- }
-@@ -61,7 +61,7 @@
-     {
-     if (this->Database != NULL)
-       {
--      vtk_sqlite3_finalize(this->Statement);
-+      sqlite3_finalize(this->Statement);
-       this->Statement = NULL;
-       }
-     }
-@@ -131,8 +131,8 @@
-   if (this->Statement)
-     {
-     vtkDebugMacro(<<"Finalizing old statement");
--    int finalizeStatus = vtk_sqlite3_finalize(this->Statement);
--    if (finalizeStatus != VTK_SQLITE_OK)
-+    int finalizeStatus = sqlite3_finalize(this->Statement);
-+    if (finalizeStatus != SQLITE_OK)
-       {
-       vtkWarningMacro(<<"SetQuery(): Finalize returned unexpected code "
-                       << finalizeStatus);
-@@ -151,19 +151,19 @@
-       return false;
-       }
- 
--    vtk_sqlite3 *db = dbContainer->SQLiteInstance;
-+    sqlite3 *db = dbContainer->SQLiteInstance;
-     const char *unused_statement;
- 
--    int prepareStatus = vtk_sqlite3_prepare_v2(db,
-+    int prepareStatus = sqlite3_prepare_v2(db,
-                                                this->Query,
-                                                static_cast<int>(strlen(this->Query)),
-                                                &this->Statement,
-                                                &unused_statement);
- 
--    if (prepareStatus != VTK_SQLITE_OK)
-+    if (prepareStatus != SQLITE_OK)
-       {
--      this->SetLastErrorText(vtk_sqlite3_errmsg(db));
--      vtkWarningMacro(<<"SetQuery(): vtk_sqlite3_prepare_v2() failed with error message "
-+      this->SetLastErrorText(sqlite3_errmsg(db));
-+      vtkWarningMacro(<<"SetQuery(): sqlite3_prepare_v2() failed with error message "
-                     << this->GetLastErrorText()
-                     << " on statement: '"
-                     << this->Query << "'");
-@@ -194,31 +194,31 @@
-     }
-   else
-     {
--    vtk_sqlite3_reset(this->Statement);
-+    sqlite3_reset(this->Statement);
-     }
- 
-   vtkDebugMacro(<<"Execute(): Query ready to execute.");
- 
-   this->InitialFetch = true;
--  int result = vtk_sqlite3_step(this->Statement);
-+  int result = sqlite3_step(this->Statement);
-   this->InitialFetchResult = result;
- 
--  if (result == VTK_SQLITE_DONE)
-+  if (result == SQLITE_DONE)
-     {
-     this->SetLastErrorText(NULL);
-     this->Active = true;
-     return true;
-     }
--  else if (result != VTK_SQLITE_ROW)
-+  else if (result != SQLITE_ROW)
-     {
-     vtkSQLiteDatabase *dbContainer =
-       vtkSQLiteDatabase::SafeDownCast(this->Database);
-     assert(dbContainer != NULL);
- 
--    vtk_sqlite3 *db = dbContainer->SQLiteInstance;
-+    sqlite3 *db = dbContainer->SQLiteInstance;
- 
--    this->SetLastErrorText(vtk_sqlite3_errmsg(db));
--    vtkDebugMacro(<< "Execute(): vtk_sqlite3_step() returned error message "
-+    this->SetLastErrorText(sqlite3_errmsg(db));
-+    vtkDebugMacro(<< "Execute(): sqlite3_step() returned error message "
-                   << this->GetLastErrorText());
-     this->Active = false;
-     return false;
-@@ -239,7 +239,7 @@
-     }
-   else
-     {
--    return vtk_sqlite3_column_count(this->Statement);
-+    return sqlite3_column_count(this->Statement);
-     }
- }
- 
-@@ -259,7 +259,7 @@
-     }
-   else
-     {
--    return vtk_sqlite3_column_name(this->Statement, column);
-+    return sqlite3_column_name(this->Statement, column);
-     }
- }
- 
-@@ -279,22 +279,22 @@
-     }
-   else
-     {
--    switch (vtk_sqlite3_column_type(this->Statement, column))
-+    switch (sqlite3_column_type(this->Statement, column))
-       {
--      case VTK_SQLITE_INTEGER:
-+      case SQLITE_INTEGER:
-         return VTK_INT;
--      case VTK_SQLITE_FLOAT:
-+      case SQLITE_FLOAT:
-         return VTK_FLOAT;
--      case VTK_SQLITE_TEXT:
-+      case SQLITE_TEXT:
-         return VTK_STRING;
--      case VTK_SQLITE_BLOB:
-+      case SQLITE_BLOB:
-         return VTK_STRING; // until we have a BLOB type of our own
--      case VTK_SQLITE_NULL:
-+      case SQLITE_NULL:
-         return VTK_VOID; // ??? what makes sense here?
-       default:
-       {
-       vtkErrorMacro(<<"GetFieldType(): Unknown data type "
--                    << vtk_sqlite3_column_type(this->Statement, column)
-+                    << sqlite3_column_type(this->Statement, column)
-                     <<" from SQLite.");
-       return VTK_VOID;
-       }
-@@ -315,7 +315,7 @@
-     {
-     vtkDebugMacro(<<"NextRow(): Initial fetch being handled.");
-     this->InitialFetch = false;
--    if (this->InitialFetchResult == VTK_SQLITE_DONE)
-+    if (this->InitialFetchResult == SQLITE_DONE)
-       {
-       return false;
-       }
-@@ -326,12 +326,12 @@
-     }
-   else
-     {
--    int result = vtk_sqlite3_step(this->Statement);
--    if (result == VTK_SQLITE_DONE)
-+    int result = sqlite3_step(this->Statement);
-+    if (result == SQLITE_DONE)
-       {
-       return false;
-       }
--    else if (result == VTK_SQLITE_ROW)
-+    else if (result == SQLITE_ROW)
-       {
-       return true;
-       }
-@@ -339,8 +339,8 @@
-       {
-       vtkSQLiteDatabase *dbContainer = vtkSQLiteDatabase::SafeDownCast( this->Database );
-       assert(dbContainer != NULL);
--      vtk_sqlite3 *db = dbContainer->SQLiteInstance;
--      this->SetLastErrorText(vtk_sqlite3_errmsg(db));
-+      sqlite3 *db = dbContainer->SQLiteInstance;
-+      this->SetLastErrorText(sqlite3_errmsg(db));
-       vtkErrorMacro(<<"NextRow(): Database returned error code "
-                     << result << " with the following message: "
-                     << this->GetLastErrorText());
-@@ -366,33 +366,33 @@
-     }
-   else
-     {
--    switch (vtk_sqlite3_column_type(this->Statement, column))
-+    switch (sqlite3_column_type(this->Statement, column))
-       {
--      case VTK_SQLITE_INTEGER:
--        return vtkVariant(vtk_sqlite3_column_int(this->Statement, column));
-+      case SQLITE_INTEGER:
-+        return vtkVariant(sqlite3_column_int(this->Statement, column));
- 
--      case VTK_SQLITE_FLOAT:
--        return vtkVariant(vtk_sqlite3_column_double(this->Statement, column));
-+      case SQLITE_FLOAT:
-+        return vtkVariant(sqlite3_column_double(this->Statement, column));
- 
--      case VTK_SQLITE_TEXT:
-+      case SQLITE_TEXT:
-       {
-       vtksys_ios::ostringstream str;
--      str << vtk_sqlite3_column_text(this->Statement, column);
-+      str << sqlite3_column_text(this->Statement, column);
-       return vtkVariant(vtkStdString(str.str()));
-       }
- 
--      case VTK_SQLITE_BLOB:
-+      case SQLITE_BLOB:
-       {
-       // This is a hack ... by passing the BLOB to vtkStdString with an explicit
-       // byte count, we ensure that the string will store all of the BLOB's bytes,
-       // even if there are NULL values.
- 
-       return vtkVariant(vtkStdString(
--        static_cast<const char*>(vtk_sqlite3_column_blob(this->Statement, column)),
--        vtk_sqlite3_column_bytes(this->Statement, column)));
-+        static_cast<const char*>(sqlite3_column_blob(this->Statement, column)),
-+        sqlite3_column_bytes(this->Statement, column)));
-       }
- 
--      case VTK_SQLITE_NULL:
-+      case SQLITE_NULL:
-       default:
-         return vtkVariant();
-       }
-@@ -423,11 +423,11 @@
-   vtkSQLiteDatabase *dbContainer = vtkSQLiteDatabase::SafeDownCast( this->Database );
-   assert(dbContainer != NULL);
- 
--  vtk_sqlite3 *db = dbContainer->SQLiteInstance;
-+  sqlite3 *db = dbContainer->SQLiteInstance;
-   char *errorMessage = NULL;
--  int result = vtk_sqlite3_exec(db, BEGIN_TRANSACTION, NULL, NULL, &errorMessage);
-+  int result = sqlite3_exec(db, BEGIN_TRANSACTION, NULL, NULL, &errorMessage);
- 
--  if (result == VTK_SQLITE_OK)
-+  if (result == SQLITE_OK)
-     {
-     this->TransactionInProgress = true;
-     this->SetLastErrorText(NULL);
-@@ -451,7 +451,7 @@
- {
-   if (this->Statement)
-     {
--    vtk_sqlite3_finalize(this->Statement);
-+    sqlite3_finalize(this->Statement);
-     this->Statement = NULL;
-     }
- 
-@@ -463,11 +463,11 @@
- 
-   vtkSQLiteDatabase *dbContainer = vtkSQLiteDatabase::SafeDownCast( this->Database );
-   assert(dbContainer != NULL);
--  vtk_sqlite3 *db = dbContainer->SQLiteInstance;
-+  sqlite3 *db = dbContainer->SQLiteInstance;
-   char *errorMessage = NULL;
--  int result = vtk_sqlite3_exec(db, COMMIT_TRANSACTION, NULL, NULL, &errorMessage);
-+  int result = sqlite3_exec(db, COMMIT_TRANSACTION, NULL, NULL, &errorMessage);
- 
--  if (result == VTK_SQLITE_OK)
-+  if (result == SQLITE_OK)
-     {
-     this->TransactionInProgress = false;
-     this->SetLastErrorText(NULL);
-@@ -499,11 +499,11 @@
- 
-   vtkSQLiteDatabase *dbContainer = vtkSQLiteDatabase::SafeDownCast( this->Database );
-   assert(dbContainer != NULL);
--  vtk_sqlite3 *db = dbContainer->SQLiteInstance;
-+  sqlite3 *db = dbContainer->SQLiteInstance;
-   char *errorMessage = NULL;
--  int result = vtk_sqlite3_exec(db, ROLLBACK_TRANSACTION, NULL, NULL, &errorMessage);
-+  int result = sqlite3_exec(db, ROLLBACK_TRANSACTION, NULL, NULL, &errorMessage);
- 
--  if (result == VTK_SQLITE_OK)
-+  if (result == SQLITE_OK)
-     {
-     this->TransactionInProgress = false;
-     this->SetLastErrorText(NULL);
-@@ -647,11 +647,11 @@
-   if (this->Active)
-     {
-     this->Active = false;
--    vtk_sqlite3_reset(this->Statement);
-+    sqlite3_reset(this->Statement);
-     }
--  int status = vtk_sqlite3_bind_int(this->Statement, index+1, value);
-+  int status = sqlite3_bind_int(this->Statement, index+1, value);
- 
--  if (status != VTK_SQLITE_OK)
-+  if (status != SQLITE_OK)
-     {
-     vtksys_ios::ostringstream errormessage;
-     errormessage << "sqlite_bind_int returned error: " << status;
-@@ -676,11 +676,11 @@
-   if (this->Active)
-     {
-     this->Active = false;
--    vtk_sqlite3_reset(this->Statement);
-+    sqlite3_reset(this->Statement);
-     }
--  int status = vtk_sqlite3_bind_int(this->Statement, index+1, static_cast<vtk_sqlite_int64>(value));
-+  int status = sqlite3_bind_int(this->Statement, index+1, static_cast<sqlite_int64>(value));
- 
--  if (status != VTK_SQLITE_OK)
-+  if (status != SQLITE_OK)
-     {
-     vtksys_ios::ostringstream errormessage;
-     errormessage << "sqlite_bind_int64 returned error: " << status;
-@@ -705,12 +705,12 @@
-   if (this->Active)
-     {
-     this->Active = false;
--    vtk_sqlite3_reset(this->Statement);
-+    sqlite3_reset(this->Statement);
-     }
- 
--  int status = vtk_sqlite3_bind_double(this->Statement, index+1, value);
-+  int status = sqlite3_bind_double(this->Statement, index+1, value);
- 
--  if (status != VTK_SQLITE_OK)
-+  if (status != SQLITE_OK)
-     {
-     vtksys_ios::ostringstream errormessage;
-     errormessage << "sqlite_bind_double returned error: " << status;
-@@ -734,12 +734,12 @@
-   if (this->Active)
-     {
-     this->Active = false;
--    vtk_sqlite3_reset(this->Statement);
-+    sqlite3_reset(this->Statement);
-     }
- 
--  int status = vtk_sqlite3_bind_text(this->Statement, index+1, value, length, VTK_SQLITE_TRANSIENT);
-+  int status = sqlite3_bind_text(this->Statement, index+1, value, length, SQLITE_TRANSIENT);
- 
--  if (status != VTK_SQLITE_OK)
-+  if (status != SQLITE_OK)
-     {
-     vtksys_ios::ostringstream errormessage;
-     errormessage << "sqlite_bind_text returned error: " << status;
-@@ -763,17 +763,17 @@
-   if (this->Active)
-     {
-     this->Active = false;
--    vtk_sqlite3_reset(this->Statement);
-+    sqlite3_reset(this->Statement);
-     }
- 
-   int status =
--    vtk_sqlite3_bind_blob(this->Statement,
-+    sqlite3_bind_blob(this->Statement,
-                           index+1,
-                           data,
-                           length,
--                          VTK_SQLITE_TRANSIENT);
-+                          SQLITE_TRANSIENT);
- 
--  if (status != VTK_SQLITE_OK)
-+  if (status != SQLITE_OK)
-     {
-     vtksys_ios::ostringstream errormessage;
-     errormessage << "sqlite_bind_blob returned error: " << status;
-@@ -797,12 +797,12 @@
-   if (this->Active)
-     {
-     this->Active = false;
--    vtk_sqlite3_reset(this->Statement);
-+    sqlite3_reset(this->Statement);
-     }
- 
--  int status = vtk_sqlite3_clear_bindings(this->Statement);
-+  int status = sqlite3_clear_bindings(this->Statement);
- 
--  if (status != VTK_SQLITE_OK)
-+  if (status != SQLITE_OK)
-     {
-     vtksys_ios::ostringstream errormessage;
-     errormessage << "sqlite_clear_bindings returned error: " << status;
---- VTK/IO/SQL/vtkSQLiteDatabase.h
-+++ VTK/IO/SQL/vtkSQLiteDatabase.h
-@@ -49,7 +49,7 @@
- class vtkSQLQuery;
- class vtkSQLiteQuery;
- class vtkStringArray;
--struct vtk_sqlite3;
-+struct sqlite3;
- 
- class VTKIOSQL_EXPORT vtkSQLiteDatabase : public vtkSQLDatabase
- {
-@@ -147,7 +147,7 @@
-   virtual bool ParseURL(const char* url);
- 
- private:
--  vtk_sqlite3 *SQLiteInstance;
-+  sqlite3 *SQLiteInstance;
- 
-   // We want this to be private, a user of this class
-   // should not be setting this for any reason
---- VTK/IO/SQL/vtkSQLiteQuery.h
-+++ VTK/IO/SQL/vtkSQLiteQuery.h
-@@ -47,7 +47,7 @@
- class vtkSQLiteDatabase;
- class vtkVariant;
- class vtkVariantArray;
--struct vtk_sqlite3_stmt;
-+struct sqlite3_stmt;
- 
- class VTKIOSQL_EXPORT vtkSQLiteQuery : public vtkSQLQuery
- {
-@@ -155,7 +155,7 @@
-   vtkSQLiteQuery(const vtkSQLiteQuery &); // Not implemented.
-   void operator=(const vtkSQLiteQuery &); // Not implemented.
- 
--  vtk_sqlite3_stmt *Statement;
-+  sqlite3_stmt *Statement;
-   bool InitialFetch;
-   int InitialFetchResult;
-   char *LastErrorText;
---- VTK/ThirdParty/sqlite/CMakeLists.txt
-+++ VTK/ThirdParty/sqlite/CMakeLists.txt
-@@ -1,4 +1,4 @@
--set(vtksqlite_THIRD_PARTY 1)
--set(vtksqlite_LIBRARIES vtksqlite)
-+#set(vtksqlite_THIRD_PARTY 1)
-+set(vtksqlite_LIBRARIES sqlite3)
- vtk_module_export_info()
--add_subdirectory(vtksqlite)
-+#add_subdirectory(vtksqlite)

diff --git a/sci-visualization/paraview/files/paraview-4.0.1-vtk-cg-path.patch b/sci-visualization/paraview/files/paraview-4.0.1-vtk-cg-path.patch
deleted file mode 100644
index 58ddde9..0000000
--- a/sci-visualization/paraview/files/paraview-4.0.1-vtk-cg-path.patch
+++ /dev/null
@@ -1,36 +0,0 @@
---- ParaView-3.98.0-src/VTK/CMake/FindCg.cmake
-+++ ParaView-3.98.0-src/VTK/CMake/FindCg.cmake
-@@ -82,6 +82,7 @@
-     FIND_PROGRAM( CG_COMPILER cgc
-       /usr/bin
-       /usr/local/bin
-+      /opt/nvidia-cg-toolkit/bin
-       DOC "The Cg Compiler"
-       )
-     GET_FILENAME_COMPONENT(CG_COMPILER_DIR "${CG_COMPILER}" PATH)
-@@ -89,6 +90,7 @@
-     FIND_PATH( CG_INCLUDE_PATH Cg/cg.h
-       /usr/include
-       /usr/local/include
-+      /opt/nvidia-cg-toolkit/include
-       ${CG_COMPILER_SUPER_DIR}/include
-       DOC "The directory where Cg/cg.h resides"
-       )
-@@ -98,6 +100,8 @@
-       /usr/lib
-       /usr/local/lib64
-       /usr/local/lib
-+      /opt/nvidia-cg-toolkit/lib64
-+      /opt/nvidia-cg-toolkit/lib
-       ${CG_COMPILER_SUPER_DIR}/lib64
-       ${CG_COMPILER_SUPER_DIR}/lib
-       DOC "The Cg runtime library"
-@@ -108,6 +112,8 @@
-       /usr/lib
-       /usr/local/lib64
-       /usr/local/lib
-+      /opt/nvidia-cg-toolkit/lib64
-+      /opt/nvidia-cg-toolkit/lib
-       ${CG_COMPILER_SUPER_DIR}/lib64
-       ${CG_COMPILER_SUPER_DIR}/lib
-       DOC "The Cg runtime library"

diff --git a/sci-visualization/paraview/files/paraview-4.0.1-vtknetcd.patch b/sci-visualization/paraview/files/paraview-4.0.1-vtknetcd.patch
deleted file mode 100644
index a478b7d..0000000
--- a/sci-visualization/paraview/files/paraview-4.0.1-vtknetcd.patch
+++ /dev/null
@@ -1,79 +0,0 @@
-adapted from debian patch need to be applied after paraview-3.14.1-removesqlite.patch
-
---- ParaView-3.98.0-src/VTK/ThirdParty/netcdf/CMakeLists.txt
-+++ ParaView-3.98.0-src/VTK/ThirdParty/netcdf/CMakeLists.txt
-@@ -1,8 +1,8 @@
--set(vtknetcdf_THIRD_PARTY 1)
--set(vtknetcdf_LIBRARIES vtkNetCDF vtkNetCDF_cxx)
--set(vtknetcdf_INCLUDE_DIRS
--  ${vtknetcdf_SOURCE_DIR}/vtknetcdf/include
--  ${vtknetcdf_BINARY_DIR}/vtknetcdf
--  )
-+#set(vtknetcdf_THIRD_PARTY 1)
-+set(vtknetcdf_LIBRARIES netcdf netcdf_c++)
-+#set(vtknetcdf_INCLUDE_DIRS
-+#  ${vtknetcdf_SOURCE_DIR}/vtknetcdf/include
-+#  ${vtknetcdf_BINARY_DIR}/vtknetcdf
-+#  )
- vtk_module_export_info()
--add_subdirectory(vtknetcdf)
-+#add_subdirectory(vtknetcdf)
---- ParaView-3.98.0-src/VTK/ThirdParty/netcdf/vtk_netcdf.h
-+++ ParaView-3.98.0-src/VTK/ThirdParty/netcdf/vtk_netcdf.h
-@@ -16,6 +16,6 @@
- #define __vtk_netcdf_h
- 
- /* Use the netcdf library configured for VTK.  */
--#include <vtknetcdf/include/netcdf.h>
-+#include <netcdf.h>
- 
- #endif
---- ParaView-3.98.0-src/VTK/ThirdParty/netcdf/vtk_netcdfcpp.h
-+++ ParaView-3.98.0-src/VTK/ThirdParty/netcdf/vtk_netcdfcpp.h
-@@ -16,6 +16,6 @@
- #define __vtk_netcdfcpp_h
- 
- /* Use the netcdf library configured for VTK.  */
--#include <vtknetcdf/cxx/netcdfcpp.h>
-+#include <netcdfcpp.h>
- 
- #endif
---- ParaView-3.98.0-src/VTK/ThirdParty/exodusII/vtkexodusII/test/CMakeLists.txt
-+++ ParaView-3.98.0-src/VTK/ThirdParty/exodusII/vtkexodusII/test/CMakeLists.txt
-@@ -21,7 +21,7 @@
-   )
- 
- add_executable(ExoIICTests ${ExoIICTests})
--target_link_libraries(ExoIICTests vtkCommon vtkexoIIc vtkNetCDF)
-+target_link_libraries(ExoIICTests vtkCommon vtkexoIIc netcdf)
- 
- set(TestsToRun ${ExoIICTests})
- remove(TestsToRun ExoIICTests.cxx)
---- ParaView-3.98.0-src/VTK/ThirdParty/exodusII/vtkexodusII/CMakeLists.txt
-+++ ParaView-3.98.0-src/VTK/ThirdParty/exodusII/vtkexodusII/CMakeLists.txt
-@@ -241,7 +241,7 @@
- 
- 
- VTK_ADD_LIBRARY(vtkexoIIc ${cbind_SRCS})
--TARGET_LINK_LIBRARIES(vtkexoIIc vtkNetCDF)
-+TARGET_LINK_LIBRARIES(vtkexoIIc netcdf)
- 
- IF(NOT VTK_INSTALL_NO_DEVELOPMENT)
- #  INSTALL_FILES(${VTK_INSTALL_INCLUDE_DIR}/vtkexodus2 .h
---- ParaView-3.98.0-src/VTK/IO/NetCDF/CMakeLists.txt
-+++ ParaView-3.98.0-src/VTK/IO/NetCDF/CMakeLists.txt
-@@ -10,5 +10,5 @@
- 
- vtk_module_library(vtkIONetCDF ${Module_SRCS})
- 
--target_link_libraries(vtkIONetCDF vtkNetCDF_cxx)
-+target_link_libraries(vtkIONetCDF netcdf netcdf_c++)
- set_target_properties(vtkIONetCDF PROPERTIES LINK_INTERFACE_LIBRARIES "")
---- ParaView-3.98.0-src/VTK/IO/ParallelNetCDF/CMakeLists.txt
-+++ ParaView-3.98.0-src/VTK/IO/ParallelNetCDF/CMakeLists.txt
-@@ -8,4 +8,4 @@
- 
- vtk_module_library(vtkIOParallelNetCDF ${Module_SRCS})
- 
--target_link_libraries(vtkIOParallelNetCDF vtkNetCDF_cxx)
-+target_link_libraries(vtkIOParallelNetCDF netcdf netcdf_c++)

diff --git a/sci-visualization/paraview/files/paraview-4.1.0-glxext-legacy.patch b/sci-visualization/paraview/files/paraview-4.1.0-glxext-legacy.patch
deleted file mode 100644
index 65a5b20..0000000
--- a/sci-visualization/paraview/files/paraview-4.1.0-glxext-legacy.patch
+++ /dev/null
@@ -1,9 +0,0 @@
---- a/ParaView-v4.1.0/VTK/Rendering/OpenGL/vtkXOpenGLRenderWindow.cxx_orig	2014-01-11 15:02:10.000000000 +0100
-+++ b/ParaView-v4.1.0/VTK/Rendering/OpenGL/vtkXOpenGLRenderWindow.cxx	2014-11-11 13:12:25.000000000 +0100
-@@ -28,5 +28,5 @@
- // define GLX_GLXEXT_LEGACY to prevent glx.h to include glxext.h provided by
- // the system
--//#define GLX_GLXEXT_LEGACY
-+#define GLX_GLXEXT_LEGACY
- #include "GL/glx.h"
- 

diff --git a/sci-visualization/paraview/files/paraview-4.1.0-vtk-freetype.patch b/sci-visualization/paraview/files/paraview-4.1.0-vtk-freetype.patch
deleted file mode 100644
index b7d3e40..0000000
--- a/sci-visualization/paraview/files/paraview-4.1.0-vtk-freetype.patch
+++ /dev/null
@@ -1,22 +0,0 @@
---- a/ParaView-v4.2.0-source/VTK/Rendering/FreeType/vtkFreeTypeTools.cxx_orig	2014-12-23 09:25:35.000000000 +0100
-+++ b/ParaView-v4.2.0-source/VTK/Rendering/FreeType/vtkFreeTypeTools.cxx	2014-12-24 09:40:31.886953389 +0100
-@@ -1185,7 +1185,7 @@
-     if (bitmap)
-       {
-       metaData.ascent = std::max(bitmapGlyph->top - 1, metaData.ascent);
--      metaData.descent = std::min(-(bitmap->rows - (bitmapGlyph->top - 1)),
-+      metaData.descent = std::min(-(static_cast<int>(bitmap->rows) - (bitmapGlyph->top - 1)),
-                                   metaData.descent);
-       }
-     ++heightString;
-@@ -1952,8 +1952,8 @@
-     if (bitmap)
-       {
-       bbox[0] = std::min(bbox[0], pen[0] + bitmapGlyph->left);
--      bbox[1] = std::max(bbox[1], pen[0] + bitmapGlyph->left + bitmap->width);
--      bbox[2] = std::min(bbox[2], pen[1] + bitmapGlyph->top - 1 - bitmap->rows);
-+      bbox[1] = std::max(bbox[1], pen[0] + bitmapGlyph->left + static_cast<int>(bitmap->width));
-+      bbox[2] = std::min(bbox[2], pen[1] + bitmapGlyph->top - 1 - static_cast<int>(bitmap->rows));
-       bbox[3] = std::max(bbox[3], pen[1] + bitmapGlyph->top - 1);
-       }
-     else

diff --git a/sci-visualization/paraview/paraview-4.1.0-r2.ebuild b/sci-visualization/paraview/paraview-4.1.0-r2.ebuild
deleted file mode 100644
index 20bed18..0000000
--- a/sci-visualization/paraview/paraview-4.1.0-r2.ebuild
+++ /dev/null
@@ -1,302 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-inherit eutils multilib versionator python-single-r1 cmake-utils
-
-MAIN_PV=$(get_major_version)
-MAJOR_PV=$(get_version_component_range 1-2)
-MY_P="ParaView-v${PV}-source"
-
-DESCRIPTION="ParaView is a powerful scientific data visualization application"
-HOMEPAGE="http://www.paraview.org"
-SRC_URI="http://www.paraview.org/files/v${MAJOR_PV}/${MY_P}.tar.gz"
-RESTRICT="mirror"
-
-LICENSE="paraview GPL-2"
-KEYWORDS="~amd64 ~x86"
-SLOT="0"
-IUSE="boost cg coprocessing development doc examples ffmpeg mpi mysql nvcontrol plugins python qt4 sqlite tcl test tk"
-RESTRICT="test"
-
-REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )
-	mysql? ( sqlite )" # "vtksqlite, needed by vtkIOSQL" and "vtkIOSQL, needed by vtkIOMySQL"
-
-RDEPEND="
-	dev-libs/expat
-	dev-libs/jsoncpp
-	dev-libs/libxml2:2
-	<dev-libs/protobuf-2.6
-	media-libs/freetype
-	media-libs/libpng:0
-	media-libs/libtheora
-	media-libs/tiff:0=
-	sci-libs/hdf5[mpi=]
-	>=sci-libs/netcdf-4.2[hdf5]
-	>=sci-libs/netcdf-cxx-4.2:3
-	sys-libs/zlib
-	virtual/jpeg:0
-	virtual/opengl
-	>=x11-libs/gl2ps-1.3.8
-	x11-libs/libX11
-	x11-libs/libXext
-	x11-libs/libXmu
-	x11-libs/libXt
-	boost? ( >=dev-libs/boost-1.40.0[mpi?,${PYTHON_USEDEP}] )
-	coprocessing? (
-		plugins? (
-			dev-python/PyQt4
-			dev-qt/qtgui:4
-		)
-	)
-	ffmpeg? ( virtual/ffmpeg )
-	mpi? ( virtual/mpi[cxx,romio] )
-	mysql? ( virtual/mysql )
-	python? (
-		${PYTHON_DEPS}
-		dev-python/matplotlib[${PYTHON_USEDEP}]
-		dev-python/numpy[${PYTHON_USEDEP}]
-		dev-python/sip[${PYTHON_USEDEP}]
-		dev-python/twisted-core[${PYTHON_USEDEP}]
-		dev-python/zope-interface[${PYTHON_USEDEP}]
-		mpi? ( dev-python/mpi4py[${PYTHON_USEDEP}] )
-		qt4? ( dev-python/PyQt4[opengl,webkit,${PYTHON_USEDEP}] )
-	)
-	qt4? (
-		dev-qt/designer:4
-		dev-qt/qtgui:4
-		dev-qt/qtopengl:4
-		dev-qt/qthelp:4[compat]
-		dev-qt/qtsql:4
-		dev-qt/qtwebkit:4
-	)
-	sqlite? ( dev-db/sqlite:3 )
-	tcl? ( dev-lang/tcl:0= )
-	tk? ( dev-lang/tk:0= )"
-DEPEND="${RDEPEND}
-	doc? ( app-doc/doxygen )"
-
-S=${WORKDIR}/${MY_P%-source}
-
-pkg_setup() {
-	python-single-r1_pkg_setup
-	PVLIBDIR=$(get_libdir)/${PN}-${MAJOR_PV}
-}
-
-src_prepare() {
-	# see patch headers for description
-	epatch "${FILESDIR}"/${PN}-4.0.1-xdmf-cstring.patch \
-		"${FILESDIR}"/${PN}-4.0.1-removesqlite.patch \
-		"${FILESDIR}"/${PN}-4.0.1-gcc-4.7.patch \
-		"${FILESDIR}"/${PN}-4.0.1-vtk-cg-path.patch \
-		"${FILESDIR}"/${PN}-4.0.1-Protobuf.patch \
-		"${FILESDIR}"/${P}-glxext-legacy.patch \
-		"${FILESDIR}"/${P}-no-fatal-warnings.patch \
-		"${FILESDIR}"/${P}-vtk-freetype.patch
-
-	# lib64 fixes
-	sed -i \
-		-e "s:/usr/lib:${EPREFIX}/usr/$(get_libdir):g" \
-		 VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/CMakeLists.txt || die
-	sed -i \
-		-e "s:\/lib\/python:\/$(get_libdir)\/python:g" \
-		 VTK/ThirdParty/xdmf2/vtkxdmf2/CMake/setup_install_paths.py || die
-	sed -i \
-		-e "s:lib/paraview-:$(get_libdir)/paraview-:g" \
-		CMakeLists.txt \
-		Plugins/SciberQuestToolKit/CMakeLists.txt \
-		ParaViewConfig.cmake.in \
-		CoProcessing/PythonCatalyst/vtkCPPythonScriptPipeline.cxx \
-		ParaViewCore/ClientServerCore/Core/vtkProcessModuleInitializePython.h \
-		ParaViewCore/ClientServerCore/Core/vtkPVPluginTracker.cxx \
-		Plugins/SciberQuestToolKit/ParaViewPlugin/CMakeLists.txt \
-		Plugins/SciberQuestToolKit/SciberQuest/CMakeLists.txt || die
-
-	# no proper switch
-	use nvcontrol || {
-		sed -i \
-			-e '/VTK_USE_NVCONTROL/s#1#0#' \
-			VTK/Rendering/OpenGL/CMakeLists.txt || die
-	}
-}
-
-src_configure() {
-	local mysql_lib mysql_includedir
-
-	if use mysql ; then
-		if [[ $(mysql_config --version | sed 's/\.//g') -lt 5529 ]] ; then
-			mysql_lib="/usr/$(get_libdir)/mysql/libmysqlclient.so"
-			mysql_includedir="/usr/include/mysql"
-		else
-			mysql_lib="$(mysql_config --variable=pkglibdir)/libmysqlclient.so"
-			mysql_includedir="$(mysql_config --variable=pkgincludedir)"
-		fi
-	fi
-
-	# TODO: use system jsoncpp
-	# VTK_USE_SYSTEM_QTTESTING
-	# PARAVIEW_USE_SYSTEM_AUTOBAHN
-	local mycmakeargs=(
-		-DPV_INSTALL_LIB_DIR="${PVLIBDIR}"
-		-DCMAKE_INSTALL_PREFIX="${EPREFIX}"/usr
-		-DEXPAT_INCLUDE_DIR="${EPREFIX}"/usr/include
-		-DEXPAT_LIBRARY="${EPREFIX}"/usr/$(get_libdir)/libexpat.so
-		-DOPENGL_gl_LIBRARY="${EPREFIX}"/usr/$(get_libdir)/libGL.so
-		-DOPENGL_glu_LIBRARY="${EPREFIX}"/usr/$(get_libdir)/libGLU.so
-		-DBUILD_SHARED_LIBS=ON
-		-DVTK_USE_SYSTEM_EXPAT=ON
-		-DVTK_USE_SYSTEM_FREETYPE=ON
-		-DVTK_USE_SYSTEM_GL2PS=ON
-		-DVTK_USE_SYSTEM_HDF5=ON
-		-DVTK_USE_SYSTEM_JPEG=ON
-		-DVTK_USE_SYSTEM_JSONCPP=ON
-		-DVTK_USE_SYSTEM_LIBXML2=ON
-		-DVTK_USE_SYSTEM_NETCDF=ON
-		-DVTK_USE_SYSTEM_OGGTHEORA=ON
-		-DVTK_USE_SYSTEM_PNG=ON
-		-DVTK_USE_SYSTEM_PROTOBUF=ON
-		-DVTK_USE_SYSTEM_TIFF=ON
-		-DVTK_USE_SYSTEM_XDMF2=OFF
-		-DVTK_USE_SYSTEM_ZLIB=ON
-		-DPARAVIEW_USE_SYSTEM_MPI4PY=ON
-		-DVTK_USE_SYSTEM_ZOPE=ON
-		-DVTK_USE_SYSTEM_TWISTED=ON
-		-DCMAKE_VERBOSE_MAKEFILE=ON
-		-DCMAKE_COLOR_MAKEFILE=TRUE
-		-DVTK_USE_OFFSCREEN=TRUE
-		-DCMAKE_USE_PTHREADS=ON
-		-DVTK_USE_FFMPEG_ENCODER=OFF
-		-DPROTOC_LOCATION=$(type -P protoc)
-		-DVTK_Group_StandAlone=ON
-		-DMYSQL_INCLUDE_DIRECTORIES="$(usex mysql "${mysql_includedir}" "")"
-		-DMYSQL_LIBRARY="$(usex mysql "${mysql_lib}" "")"
-		# force this module due to incorrect build system deps
-		# wrt bug 460528
-		-DModule_vtkUtilitiesProcessXML=ON
-		)
-
-	# TODO: XDMF_USE_MYSQL?
-	# VTK_WRAP_JAVA
-	mycmakeargs+=(
-		$(cmake-utils_use development PARAVIEW_INSTALL_DEVELOPMENT_FILES)
-		$(cmake-utils_use qt4 PARAVIEW_BUILD_QT_GUI)
-		$(cmake-utils_use qt4 Module_vtkGUISupportQtOpenGL)
-		$(cmake-utils_use qt4 Module_vtkGUISupportQtSQL)
-		$(cmake-utils_use qt4 Module_vtkGUISupportQtWebkit)
-		$(cmake-utils_use qt4 Module_vtkRenderingQt)
-		$(cmake-utils_use qt4 Module_vtkViewsQt)
-		$(cmake-utils_use qt4 VTK_Group_ParaViewQt)
-		$(cmake-utils_use qt4 VTK_Group_Qt)
-		$(cmake-utils_use !qt4 PQWIDGETS_DISABLE_QTWEBKIT)
-		$(cmake-utils_use boost Module_vtkInfovisBoost)
-		$(cmake-utils_use boost Module_vtkInfovisBoostGraphAlg)
-		$(cmake-utils_use mpi PARAVIEW_USE_MPI)
-		$(cmake-utils_use mpi PARAVIEW_USE_MPI_SSEND)
-		$(cmake-utils_use mpi PARAVIEW_USE_ICE_T)
-		$(cmake-utils_use mpi VTK_Group_MPI)
-		$(cmake-utils_use mpi VTK_XDMF_USE_MPI)
-		$(cmake-utils_use mpi XDMF_BUILD_MPI)
-		$(cmake-utils_use python PARAVIEW_ENABLE_PYTHON)
-		$(cmake-utils_use python VTK_Group_ParaViewPython)
-		$(cmake-utils_use python XDMF_WRAP_PYTHON)
-		$(cmake-utils_use python Module_vtkPython)
-		$(cmake-utils_use python Module_pqPython)
-		$(cmake-utils_use python Module_vtkWrappingPythonCore)
-		$(cmake-utils_use python Module_vtkPVPythonSupport)
-		$(cmake-utils_use python Module_AutobahnPython)
-		$(cmake-utils_use python Module_Twisted)
-		$(cmake-utils_use python Module_ZopeInterface)
-		$(cmake-utils_use python Module_vtkmpi4py)
-		$(usex qt4 "$(cmake-utils_use python Module_pqPython)" "-DModule_pqPython=OFF")
-		$(cmake-utils_use doc BUILD_DOCUMENTATION)
-		$(cmake-utils_use doc PARAVIEW_BUILD_WEB_DOCUMENTATION)
-		$(cmake-utils_use examples BUILD_EXAMPLES)
-		$(cmake-utils_use cg VTK_USE_CG_SHADERS)
-		$(cmake-utils_use mysql Module_vtkIOMySQL)
-		$(cmake-utils_use sqlite Module_vtksqlite)
-		$(cmake-utils_use coprocessing PARAVIEW_ENABLE_CATALYST)
-		$(cmake-utils_use ffmpeg PARAVIEW_ENABLE_FFMPEG)
-		$(cmake-utils_use ffmpeg VTK_USE_FFMPEG_ENCODER)
-		$(cmake-utils_use ffmpeg Module_vtkIOFFMPEG)
-		$(cmake-utils_use tk VTK_Group_Tk)
-		$(cmake-utils_use tk VTK_USE_TK)
-		$(cmake-utils_use tk Module_vtkRenderingTk)
-		$(cmake-utils_use tcl Module_vtkTclTk)
-		$(cmake-utils_use tcl Module_vtkWrappingTcl)
-		$(cmake-utils_use test BUILD_TESTING)
-		)
-
-	if use qt4 ; then
-		mycmakeargs+=( -DVTK_INSTALL_QT_DIR=/${PVLIBDIR}/plugins/designer )
-		if use python ; then
-			# paraview cannot guess sip directory properly
-			mycmakeargs+=( -DSIP_INCLUDE_DIR="${EPREFIX}$(python_get_includedir)" )
-		fi
-	fi
-
-	# TODO: MantaView VaporPlugin VRPlugin
-	mycmakeargs+=(
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_AdiosReader)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_AnalyzeNIfTIIO)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_ArrowGlyph)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_EyeDomeLighting)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_ForceTime)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_GMVReader)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_H5PartReader)
-		$(cmake-utils_use plugins RAVIEW_BUILD_PLUGIN_MobileRemoteControl)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_Moments)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_NonOrthogonalSource)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_PacMan)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_PointSprite)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_PrismPlugin)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_QuadView)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_SLACTools)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_SciberQuestToolKit)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_SierraPlotTools)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_StreamingParticles)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_SurfaceLIC)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_UncertaintyRendering)
-		# these are always needed for plugins
-		$(cmake-utils_use plugins Module_vtkFiltersFlowPaths)
-		$(cmake-utils_use plugins Module_vtkPVServerManagerApplication)
-		)
-
-	cmake-utils_src_configure
-}
-
-src_compile() {
-	cmake-utils_src_compile
-}
-
-src_install() {
-	cmake-utils_src_install
-
-	# set up the environment
-	echo "LDPATH=${EPREFIX}/usr/${PVLIBDIR}" > "${T}"/40${PN}
-
-	newicon "${S}"/Applications/ParaView/pvIcon.png paraview.png
-	make_desktop_entry paraview "Paraview" paraview
-
-	use python && python_optimize "${D}"/usr/$(get_libdir)/${PN}-${MAJOR_PV}
-}
-
-pkg_postinst() {
-	# with Qt4.5 there seem to be issues reading data files
-	# under certain locales. Setting LC_ALL=C should fix these.
-	elog ""
-	elog "If you experience data corruption during parsing of"
-	elog "data files with paraview please try setting your"
-	elog "locale to LC_ALL=C."
-	elog "If you plan to use paraview component from an existing shell"
-	elog "you should run env-update and . /etc/profile first"
-	elog ""
-	elog "paraview no longer exports bundled python modules in PYTHONPATH"
-	elog "globally due to clashes of bundled packages with system-wide"
-	elog "site-packages. If you want to use paraview's python modules"
-	elog "export"
-	elog "  PYTHONPATH=${EPREFIX}/usr/${PVLIBDIR}:${EPREFIX}/usr/${PVLIBDIR}/site-packages"
-	elog "as needed."
-}

diff --git a/sci-visualization/paraview/paraview-4.2.0-r1.ebuild b/sci-visualization/paraview/paraview-4.2.0-r1.ebuild
deleted file mode 100644
index 7777925..0000000
--- a/sci-visualization/paraview/paraview-4.2.0-r1.ebuild
+++ /dev/null
@@ -1,300 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-inherit eutils multilib versionator python-single-r1 cmake-utils
-
-MAIN_PV=$(get_major_version)
-MAJOR_PV=$(get_version_component_range 1-2)
-MY_P="ParaView-v${PV}-source"
-
-DESCRIPTION="ParaView is a powerful scientific data visualization application"
-HOMEPAGE="http://www.paraview.org"
-SRC_URI="http://www.paraview.org/files/v${MAJOR_PV}/${MY_P}.tar.gz"
-RESTRICT="mirror"
-
-LICENSE="paraview GPL-2"
-KEYWORDS="~amd64 ~x86"
-SLOT="0"
-IUSE="boost cg coprocessing development doc examples ffmpeg mpi mysql nvcontrol plugins python qt4 sqlite tcl test tk"
-RESTRICT="test"
-
-REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )
-	mysql? ( sqlite )" # "vtksqlite, needed by vtkIOSQL" and "vtkIOSQL, needed by vtkIOMySQL"
-
-RDEPEND="
-	dev-libs/expat
-	dev-libs/jsoncpp
-	dev-libs/libxml2:2
-	<dev-libs/protobuf-2.6
-	media-libs/freetype
-	media-libs/libpng:0
-	media-libs/libtheora
-	media-libs/tiff:0=
-	sci-libs/hdf5[mpi=]
-	>=sci-libs/netcdf-4.2[hdf5]
-	>=sci-libs/netcdf-cxx-4.2:3
-	sys-libs/zlib
-	virtual/jpeg:0
-	virtual/opengl
-	>=x11-libs/gl2ps-1.3.8
-	x11-libs/libX11
-	x11-libs/libXext
-	x11-libs/libXmu
-	x11-libs/libXt
-	boost? ( >=dev-libs/boost-1.40.0[mpi?,${PYTHON_USEDEP}] )
-	coprocessing? (
-		plugins? (
-			dev-python/PyQt4
-			dev-qt/qtgui:4
-		)
-	)
-	ffmpeg? ( virtual/ffmpeg )
-	mpi? ( virtual/mpi[cxx,romio] )
-	mysql? ( virtual/mysql )
-	python? (
-		${PYTHON_DEPS}
-		dev-python/matplotlib[${PYTHON_USEDEP}]
-		dev-python/numpy[${PYTHON_USEDEP}]
-		dev-python/sip[${PYTHON_USEDEP}]
-		dev-python/twisted-core[${PYTHON_USEDEP}]
-		dev-python/zope-interface[${PYTHON_USEDEP}]
-		mpi? ( dev-python/mpi4py[${PYTHON_USEDEP}] )
-		qt4? ( dev-python/PyQt4[opengl,webkit,${PYTHON_USEDEP}] )
-	)
-	qt4? (
-		dev-qt/designer:4
-		dev-qt/qtgui:4
-		dev-qt/qtopengl:4
-		dev-qt/qthelp:4[compat]
-		dev-qt/qtsql:4
-		dev-qt/qtwebkit:4
-	)
-	sqlite? ( dev-db/sqlite:3 )
-	tcl? ( dev-lang/tcl:0= )
-	tk? ( dev-lang/tk:0= )"
-DEPEND="${RDEPEND}
-	doc? ( app-doc/doxygen )"
-
-S="${WORKDIR}/${MY_P}"
-
-pkg_setup() {
-	python-single-r1_pkg_setup
-	PVLIBDIR=$(get_libdir)/${PN}-${MAJOR_PV}
-}
-
-src_prepare() {
-	# see patch headers for description
-	epatch "${FILESDIR}"/${PN}-4.0.1-xdmf-cstring.patch \
-		"${FILESDIR}"/${P}-removesqlite.patch \
-		"${FILESDIR}"/${PN}-4.0.1-gcc-4.7.patch \
-		"${FILESDIR}"/${P}-protobuf.patch \
-		"${FILESDIR}"/${PN}-4.1.0-no-fatal-warnings.patch \
-		"${FILESDIR}"/${P}-vtk-freetype.patch
-
-	# lib64 fixes
-	sed -i \
-		-e "s:/usr/lib:${EPREFIX}/usr/$(get_libdir):g" \
-		 VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/CMakeLists.txt || die
-	sed -i \
-		-e "s:\/lib\/python:\/$(get_libdir)\/python:g" \
-		 VTK/ThirdParty/xdmf2/vtkxdmf2/CMake/setup_install_paths.py || die
-	sed -i \
-		-e "s:lib/paraview-:$(get_libdir)/paraview-:g" \
-		CMakeLists.txt \
-		Plugins/SciberQuestToolKit/CMakeLists.txt \
-		ParaViewConfig.cmake.in \
-		CoProcessing/PythonCatalyst/vtkCPPythonScriptPipeline.cxx \
-		ParaViewCore/ClientServerCore/Core/vtkProcessModuleInitializePython.h \
-		ParaViewCore/ClientServerCore/Core/vtkPVPluginTracker.cxx \
-		Plugins/SciberQuestToolKit/ParaViewPlugin/CMakeLists.txt \
-		Plugins/SciberQuestToolKit/SciberQuest/CMakeLists.txt || die
-
-	# no proper switch
-	use nvcontrol || {
-		sed -i \
-			-e '/VTK_USE_NVCONTROL/s#1#0#' \
-			VTK/Rendering/OpenGL/CMakeLists.txt || die
-	}
-}
-
-src_configure() {
-	local mysql_lib mysql_includedir
-
-	if use mysql ; then
-		if [[ $(mysql_config --version | sed 's/\.//g') -lt 5529 ]] ; then
-			mysql_lib="/usr/$(get_libdir)/mysql/libmysqlclient.so"
-			mysql_includedir="/usr/include/mysql"
-		else
-			mysql_lib="$(mysql_config --variable=pkglibdir)/libmysqlclient.so"
-			mysql_includedir="$(mysql_config --variable=pkgincludedir)"
-		fi
-	fi
-
-	# TODO: use system jsoncpp
-	# VTK_USE_SYSTEM_QTTESTING
-	# PARAVIEW_USE_SYSTEM_AUTOBAHN
-	local mycmakeargs=(
-		-DPV_INSTALL_LIB_DIR="${PVLIBDIR}"
-		-DCMAKE_INSTALL_PREFIX="${EPREFIX}"/usr
-		-DEXPAT_INCLUDE_DIR="${EPREFIX}"/usr/include
-		-DEXPAT_LIBRARY="${EPREFIX}"/usr/$(get_libdir)/libexpat.so
-		-DOPENGL_gl_LIBRARY="${EPREFIX}"/usr/$(get_libdir)/libGL.so
-		-DOPENGL_glu_LIBRARY="${EPREFIX}"/usr/$(get_libdir)/libGLU.so
-		-DBUILD_SHARED_LIBS=ON
-		-DVTK_USE_SYSTEM_EXPAT=ON
-		-DVTK_USE_SYSTEM_FREETYPE=ON
-		-DVTK_USE_SYSTEM_GL2PS=ON
-		-DVTK_USE_SYSTEM_HDF5=ON
-		-DVTK_USE_SYSTEM_JPEG=ON
-		-DVTK_USE_SYSTEM_JSONCPP=ON
-		-DVTK_USE_SYSTEM_LIBXML2=ON
-		-DVTK_USE_SYSTEM_NETCDF=ON
-		-DVTK_USE_SYSTEM_OGGTHEORA=ON
-		-DVTK_USE_SYSTEM_PNG=ON
-		-DVTK_USE_SYSTEM_PROTOBUF=ON
-		-DVTK_USE_SYSTEM_TIFF=ON
-		-DVTK_USE_SYSTEM_XDMF2=OFF
-		-DVTK_USE_SYSTEM_ZLIB=ON
-		-DPARAVIEW_USE_SYSTEM_MPI4PY=ON
-		-DVTK_USE_SYSTEM_ZOPE=ON
-		-DVTK_USE_SYSTEM_TWISTED=ON
-		-DCMAKE_VERBOSE_MAKEFILE=ON
-		-DCMAKE_COLOR_MAKEFILE=TRUE
-		-DVTK_USE_OFFSCREEN=TRUE
-		-DCMAKE_USE_PTHREADS=ON
-		-DVTK_USE_FFMPEG_ENCODER=OFF
-		-DPROTOC_LOCATION=$(type -P protoc)
-		-DVTK_Group_StandAlone=ON
-		-DMYSQL_INCLUDE_DIRECTORIES="$(usex mysql "${mysql_includedir}" "")"
-		-DMYSQL_LIBRARY="$(usex mysql "${mysql_lib}" "")"
-		# force this module due to incorrect build system deps
-		# wrt bug 460528
-		-DModule_vtkUtilitiesProcessXML=ON
-		)
-
-	# TODO: XDMF_USE_MYSQL?
-	# VTK_WRAP_JAVA
-	mycmakeargs+=(
-		$(cmake-utils_use development PARAVIEW_INSTALL_DEVELOPMENT_FILES)
-		$(cmake-utils_use qt4 PARAVIEW_BUILD_QT_GUI)
-		$(cmake-utils_use qt4 Module_vtkGUISupportQtOpenGL)
-		$(cmake-utils_use qt4 Module_vtkGUISupportQtSQL)
-		$(cmake-utils_use qt4 Module_vtkGUISupportQtWebkit)
-		$(cmake-utils_use qt4 Module_vtkRenderingQt)
-		$(cmake-utils_use qt4 Module_vtkViewsQt)
-		$(cmake-utils_use qt4 VTK_Group_ParaViewQt)
-		$(cmake-utils_use qt4 VTK_Group_Qt)
-		$(cmake-utils_use !qt4 PQWIDGETS_DISABLE_QTWEBKIT)
-		$(cmake-utils_use boost Module_vtkInfovisBoost)
-		$(cmake-utils_use boost Module_vtkInfovisBoostGraphAlg)
-		$(cmake-utils_use mpi PARAVIEW_USE_MPI)
-		$(cmake-utils_use mpi PARAVIEW_USE_MPI_SSEND)
-		$(cmake-utils_use mpi PARAVIEW_USE_ICE_T)
-		$(cmake-utils_use mpi VTK_Group_MPI)
-		$(cmake-utils_use mpi VTK_XDMF_USE_MPI)
-		$(cmake-utils_use mpi XDMF_BUILD_MPI)
-		$(cmake-utils_use python PARAVIEW_ENABLE_PYTHON)
-		$(cmake-utils_use python VTK_Group_ParaViewPython)
-		$(cmake-utils_use python XDMF_WRAP_PYTHON)
-		$(cmake-utils_use python Module_vtkPython)
-		$(cmake-utils_use python Module_pqPython)
-		$(cmake-utils_use python Module_vtkWrappingPythonCore)
-		$(cmake-utils_use python Module_vtkPVPythonSupport)
-		$(cmake-utils_use python Module_AutobahnPython)
-		$(cmake-utils_use python Module_Twisted)
-		$(cmake-utils_use python Module_ZopeInterface)
-		$(cmake-utils_use python Module_vtkmpi4py)
-		$(usex qt4 "$(cmake-utils_use python Module_pqPython)" "-DModule_pqPython=OFF")
-		$(cmake-utils_use doc BUILD_DOCUMENTATION)
-		$(cmake-utils_use doc PARAVIEW_BUILD_WEB_DOCUMENTATION)
-		$(cmake-utils_use examples BUILD_EXAMPLES)
-		$(cmake-utils_use cg VTK_USE_CG_SHADERS)
-		$(cmake-utils_use mysql Module_vtkIOMySQL)
-		$(cmake-utils_use sqlite Module_vtksqlite)
-		$(cmake-utils_use coprocessing PARAVIEW_ENABLE_CATALYST)
-		$(cmake-utils_use ffmpeg PARAVIEW_ENABLE_FFMPEG)
-		$(cmake-utils_use ffmpeg VTK_USE_FFMPEG_ENCODER)
-		$(cmake-utils_use ffmpeg Module_vtkIOFFMPEG)
-		$(cmake-utils_use tk VTK_Group_Tk)
-		$(cmake-utils_use tk VTK_USE_TK)
-		$(cmake-utils_use tk Module_vtkRenderingTk)
-		$(cmake-utils_use tcl Module_vtkTclTk)
-		$(cmake-utils_use tcl Module_vtkWrappingTcl)
-		$(cmake-utils_use test BUILD_TESTING)
-		)
-
-	if use qt4 ; then
-		mycmakeargs+=( -DVTK_INSTALL_QT_DIR=/${PVLIBDIR}/plugins/designer )
-		if use python ; then
-			# paraview cannot guess sip directory properly
-			mycmakeargs+=( -DSIP_INCLUDE_DIR="${EPREFIX}$(python_get_includedir)" )
-		fi
-	fi
-
-	# TODO: MantaView VaporPlugin VRPlugin
-	mycmakeargs+=(
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_AdiosReader)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_AnalyzeNIfTIIO)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_ArrowGlyph)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_EyeDomeLighting)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_ForceTime)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_GMVReader)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_H5PartReader)
-		$(cmake-utils_use plugins RAVIEW_BUILD_PLUGIN_MobileRemoteControl)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_Moments)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_NonOrthogonalSource)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_PacMan)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_PointSprite)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_PrismPlugin)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_QuadView)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_SLACTools)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_SciberQuestToolKit)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_SierraPlotTools)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_StreamingParticles)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_SurfaceLIC)
-		$(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_UncertaintyRendering)
-		# these are always needed for plugins
-		$(cmake-utils_use plugins Module_vtkFiltersFlowPaths)
-		$(cmake-utils_use plugins Module_vtkPVServerManagerApplication)
-		)
-
-	cmake-utils_src_configure
-}
-
-src_compile() {
-	cmake-utils_src_compile
-}
-
-src_install() {
-	cmake-utils_src_install
-
-	# set up the environment
-	echo "LDPATH=${EPREFIX}/usr/${PVLIBDIR}" > "${T}"/40${PN}
-
-	newicon "${S}"/Applications/ParaView/pvIcon-32x32.png paraview.png
-	make_desktop_entry paraview "Paraview" paraview
-
-	use python && python_optimize "${D}"/usr/$(get_libdir)/${PN}-${MAJOR_PV}
-}
-
-pkg_postinst() {
-	# with Qt4.5 there seem to be issues reading data files
-	# under certain locales. Setting LC_ALL=C should fix these.
-	elog ""
-	elog "If you experience data corruption during parsing of"
-	elog "data files with paraview please try setting your"
-	elog "locale to LC_ALL=C."
-	elog "If you plan to use paraview component from an existing shell"
-	elog "you should run env-update and . /etc/profile first"
-	elog ""
-	elog "paraview no longer exports bundled python modules in PYTHONPATH"
-	elog "globally due to clashes of bundled packages with system-wide"
-	elog "site-packages. If you want to use paraview's python modules"
-	elog "export"
-	elog "  PYTHONPATH=${EPREFIX}/usr/${PVLIBDIR}:${EPREFIX}/usr/${PVLIBDIR}/site-packages"
-	elog "as needed."
-}