* [gentoo-commits] repo/gentoo:master commit in: sci-biology/embassy-phylipnew/
@ 2015-08-27 9:58 Agostino Sarubbo
0 siblings, 0 replies; 9+ messages in thread
From: Agostino Sarubbo @ 2015-08-27 9:58 UTC (permalink / raw
To: gentoo-commits
commit: 70a0e9ad2cb4a6c0b2b843d3dee8d3f78b7d9b4d
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Thu Aug 27 09:57:51 2015 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Thu Aug 27 09:58:48 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=70a0e9ad
sci-biology/embassy-phylipnew: amd64 stable wrt bug #558888
Package-Manager: portage-2.2.20.1
RepoMan-Options: --include-arches="amd64"
sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.650.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.650.ebuild b/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.650.ebuild
index 18b8b33..cd3ab7e 100644
--- a/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.650.ebuild
+++ b/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.650.ebuild
@@ -12,6 +12,6 @@ inherit emboss-r1
LICENSE+=" freedist"
-KEYWORDS="~amd64 ~ppc ~x86 ~x86-linux ~ppc-macos"
+KEYWORDS="amd64 ~ppc ~x86 ~x86-linux ~ppc-macos"
PATCHES=( "${FILESDIR}"/${P}_fix-build-system.patch )
^ permalink raw reply related [flat|nested] 9+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/embassy-phylipnew/
@ 2015-08-27 10:02 Agostino Sarubbo
0 siblings, 0 replies; 9+ messages in thread
From: Agostino Sarubbo @ 2015-08-27 10:02 UTC (permalink / raw
To: gentoo-commits
commit: 162551a06c1199c68ee56d3702a4883b7976e7fc
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Thu Aug 27 10:02:14 2015 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Thu Aug 27 10:02:14 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=162551a0
sci-biology/embassy-phylipnew: x86 stable wrt bug #558888
Package-Manager: portage-2.2.20.1
RepoMan-Options: --include-arches="x86"
sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.650.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.650.ebuild b/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.650.ebuild
index cd3ab7e..939bc4b 100644
--- a/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.650.ebuild
+++ b/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.650.ebuild
@@ -12,6 +12,6 @@ inherit emboss-r1
LICENSE+=" freedist"
-KEYWORDS="amd64 ~ppc ~x86 ~x86-linux ~ppc-macos"
+KEYWORDS="amd64 ~ppc x86 ~x86-linux ~ppc-macos"
PATCHES=( "${FILESDIR}"/${P}_fix-build-system.patch )
^ permalink raw reply related [flat|nested] 9+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/embassy-phylipnew/
@ 2015-08-27 13:47 Justin Lecher
0 siblings, 0 replies; 9+ messages in thread
From: Justin Lecher @ 2015-08-27 13:47 UTC (permalink / raw
To: gentoo-commits
commit: f5dedc5e945b517eaf67faf2fe9276587c41af2c
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Aug 27 13:28:50 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Aug 27 13:47:44 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f5dedc5e
sci-biology/embassy-phylipnew: Drop old
Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/embassy-phylipnew/Manifest | 2 --
.../embassy-phylipnew/embassy-phylipnew-3.67.ebuild | 14 --------------
2 files changed, 16 deletions(-)
diff --git a/sci-biology/embassy-phylipnew/Manifest b/sci-biology/embassy-phylipnew/Manifest
index 638f9da..6b25968 100644
--- a/sci-biology/embassy-phylipnew/Manifest
+++ b/sci-biology/embassy-phylipnew/Manifest
@@ -1,3 +1 @@
-DIST EMBOSS-6.0.1.tar.gz 20204153 SHA256 3e352902aa9dab88bf486457ff23794f19398dfc6b550c4bf175dfcad34c233d
-DIST embassy-6.0.1-phylipnew-3.67.tar.gz 1624802 SHA256 efbfdbff0109c62823caf13f20cb6462f54371d55899fcbbe29240e503584945
DIST embassy-phylipnew-3.69.650.tar.gz 1741298 SHA256 af385d01826e67e05295955f05721728abbd4feb9e11a944189414da6590bfeb SHA512 b41a31285e05a418e4fbfae7241c3658fe458e3d5d84bff472d98b7c145340a55bee1d744b5c056d0e88407074947b5f37b2182c9cb800c8a8d43dfa76d026d5 WHIRLPOOL 94cbe384a1575c322c7e3cdba7ccdb79e3e24cec7bd24776872f3e7d425d85c64fdcdc1cae6c079b40ca943b84a039ba2c7c5c059c40ceaf95c5c2e11e4a3e58
diff --git a/sci-biology/embassy-phylipnew/embassy-phylipnew-3.67.ebuild b/sci-biology/embassy-phylipnew/embassy-phylipnew-3.67.ebuild
deleted file mode 100644
index 2bc4a95..0000000
--- a/sci-biology/embassy-phylipnew/embassy-phylipnew-3.67.ebuild
+++ /dev/null
@@ -1,14 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EBOV="6.0.1"
-
-inherit embassy
-
-DESCRIPTION="EMBOSS integrated version of PHYLIP - The Phylogeny Inference Package"
-LICENSE="freedist"
-SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/old/${EBOV}/EMBOSS-${EBOV}.tar.gz
- mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
-
-KEYWORDS="amd64 ~ppc x86"
^ permalink raw reply related [flat|nested] 9+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/embassy-phylipnew/
@ 2017-02-06 21:27 David Seifert
0 siblings, 0 replies; 9+ messages in thread
From: David Seifert @ 2017-02-06 21:27 UTC (permalink / raw
To: gentoo-commits
commit: 00c7e2d1e6c26dad0da56080038b7805739ba8e2
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Mon Feb 6 20:48:01 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Mon Feb 6 21:25:17 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=00c7e2d1
sci-biology/embassy-phylipnew: Remove ppc from KEYWORDS
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3856
sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.650.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.650.ebuild b/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.650.ebuild
index 939bc4b..85ef51b 100644
--- a/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.650.ebuild
+++ b/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.650.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
@@ -12,6 +12,6 @@ inherit emboss-r1
LICENSE+=" freedist"
-KEYWORDS="amd64 ~ppc x86 ~x86-linux ~ppc-macos"
+KEYWORDS="amd64 x86 ~x86-linux ~ppc-macos"
PATCHES=( "${FILESDIR}"/${P}_fix-build-system.patch )
^ permalink raw reply related [flat|nested] 9+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/embassy-phylipnew/
@ 2017-02-19 18:44 David Seifert
0 siblings, 0 replies; 9+ messages in thread
From: David Seifert @ 2017-02-19 18:44 UTC (permalink / raw
To: gentoo-commits
commit: 2a37ce3b901ebfb75c56db7a11f45cd1999c80cb
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Feb 19 18:41:37 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Feb 19 18:44:22 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2a37ce3b
sci-biology/embassy-phylipnew: Remove old
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3937
sci-biology/embassy-phylipnew/Manifest | 1 -
.../embassy-phylipnew/embassy-phylipnew-3.69.650.ebuild | 17 -----------------
2 files changed, 18 deletions(-)
diff --git a/sci-biology/embassy-phylipnew/Manifest b/sci-biology/embassy-phylipnew/Manifest
index 0895c1d030..b996a1e785 100644
--- a/sci-biology/embassy-phylipnew/Manifest
+++ b/sci-biology/embassy-phylipnew/Manifest
@@ -1,2 +1 @@
-DIST embassy-phylipnew-3.69.650.tar.gz 1741298 SHA256 af385d01826e67e05295955f05721728abbd4feb9e11a944189414da6590bfeb SHA512 b41a31285e05a418e4fbfae7241c3658fe458e3d5d84bff472d98b7c145340a55bee1d744b5c056d0e88407074947b5f37b2182c9cb800c8a8d43dfa76d026d5 WHIRLPOOL 94cbe384a1575c322c7e3cdba7ccdb79e3e24cec7bd24776872f3e7d425d85c64fdcdc1cae6c079b40ca943b84a039ba2c7c5c059c40ceaf95c5c2e11e4a3e58
DIST embassy-phylipnew-3.69.660.tar.gz 1741298 SHA256 af385d01826e67e05295955f05721728abbd4feb9e11a944189414da6590bfeb SHA512 b41a31285e05a418e4fbfae7241c3658fe458e3d5d84bff472d98b7c145340a55bee1d744b5c056d0e88407074947b5f37b2182c9cb800c8a8d43dfa76d026d5 WHIRLPOOL 94cbe384a1575c322c7e3cdba7ccdb79e3e24cec7bd24776872f3e7d425d85c64fdcdc1cae6c079b40ca943b84a039ba2c7c5c059c40ceaf95c5c2e11e4a3e58
diff --git a/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.650.ebuild b/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.650.ebuild
deleted file mode 100644
index 85ef51b6ce..0000000000
--- a/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.650.ebuild
+++ /dev/null
@@ -1,17 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-EBO_DESCRIPTION="The Phylogeny Inference Package"
-
-AUTOTOOLS_AUTORECONF=1
-
-inherit emboss-r1
-
-LICENSE+=" freedist"
-
-KEYWORDS="amd64 x86 ~x86-linux ~ppc-macos"
-
-PATCHES=( "${FILESDIR}"/${P}_fix-build-system.patch )
^ permalink raw reply related [flat|nested] 9+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/embassy-phylipnew/
@ 2019-12-28 13:56 Ulrich Müller
0 siblings, 0 replies; 9+ messages in thread
From: Ulrich Müller @ 2019-12-28 13:56 UTC (permalink / raw
To: gentoo-commits
commit: 3756b8c634691f02848a75bb23cfc823dfab0ede
Author: Ulrich Müller <ulm <AT> gentoo <DOT> org>
AuthorDate: Sat Dec 28 13:55:49 2019 +0000
Commit: Ulrich Müller <ulm <AT> gentoo <DOT> org>
CommitDate: Sat Dec 28 13:56:19 2019 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3756b8c6
sci-biology/embassy-phylipnew: Change LICENSE to "free-noncomm".
Closes: https://bugs.gentoo.org/702534
Package-Manager: Portage-2.3.84, Repoman-2.3.20
Signed-off-by: Ulrich Müller <ulm <AT> gentoo.org>
sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.660.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.660.ebuild b/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.660.ebuild
index 69834a313b8..3ac088ed6ef 100644
--- a/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.660.ebuild
+++ b/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.660.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -9,7 +9,7 @@ EBO_EAUTORECONF=1
inherit emboss-r2
-LICENSE+=" freedist"
+LICENSE+=" free-noncomm"
KEYWORDS="~amd64 ~x86 ~x86-linux"
^ permalink raw reply related [flat|nested] 9+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/embassy-phylipnew/
@ 2021-03-13 12:10 David Seifert
0 siblings, 0 replies; 9+ messages in thread
From: David Seifert @ 2021-03-13 12:10 UTC (permalink / raw
To: gentoo-commits
commit: 073a32677c3c9bfe01fde189671ecb675fe036d5
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Mar 13 12:09:50 2021 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Mar 13 12:09:50 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=073a3267
sci-biology/embassy-phylipnew: Port to EAPI 7
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: David Seifert <soap <AT> gentoo.org>
sci-biology/embassy-phylipnew/OLD | 188 +++++++++++++++++++++
.../embassy-phylipnew-3.69.660.ebuild | 4 +-
2 files changed, 190 insertions(+), 2 deletions(-)
diff --git a/sci-biology/embassy-phylipnew/OLD b/sci-biology/embassy-phylipnew/OLD
new file mode 100644
index 00000000000..302219c1808
--- /dev/null
+++ b/sci-biology/embassy-phylipnew/OLD
@@ -0,0 +1,188 @@
+/var/tmp/portage/sci-biology/embassy-phylipnew-3.69.660/image/
+└── usr
+ ├── bin
+ │ ├── fclique
+ │ ├── fconsense
+ │ ├── fcontml
+ │ ├── fcontrast
+ │ ├── fdiscboot
+ │ ├── fdnacomp
+ │ ├── fdnadist
+ │ ├── fdnainvar
+ │ ├── fdnaml
+ │ ├── fdnamlk
+ │ ├── fdnamove
+ │ ├── fdnapars
+ │ ├── fdnapenny
+ │ ├── fdollop
+ │ ├── fdolmove
+ │ ├── fdolpenny
+ │ ├── fdrawgram
+ │ ├── fdrawtree
+ │ ├── ffactor
+ │ ├── ffitch
+ │ ├── ffreqboot
+ │ ├── fgendist
+ │ ├── fkitsch
+ │ ├── fmix
+ │ ├── fmove
+ │ ├── fneighbor
+ │ ├── fpars
+ │ ├── fpenny
+ │ ├── fproml
+ │ ├── fpromlk
+ │ ├── fprotdist
+ │ ├── fprotpars
+ │ ├── frestboot
+ │ ├── frestdist
+ │ ├── frestml
+ │ ├── fretree
+ │ ├── fseqboot
+ │ ├── fseqbootall
+ │ ├── ftreedist
+ │ └── ftreedistpair
+ └── share
+ ├── doc
+ │ └── embassy-phylipnew-3.69.660
+ │ ├── AUTHORS.bz2
+ │ ├── ChangeLog.bz2
+ │ └── README.bz2
+ ├── EMBOSS
+ │ ├── acd
+ │ │ ├── fclique.acd
+ │ │ ├── fconsense.acd
+ │ │ ├── fcontml.acd
+ │ │ ├── fcontrast.acd
+ │ │ ├── fdiscboot.acd
+ │ │ ├── fdnacomp.acd
+ │ │ ├── fdnadist.acd
+ │ │ ├── fdnainvar.acd
+ │ │ ├── fdnaml.acd
+ │ │ ├── fdnamlk.acd
+ │ │ ├── fdnamove.acd
+ │ │ ├── fdnapars.acd
+ │ │ ├── fdnapenny.acd
+ │ │ ├── fdollop.acd
+ │ │ ├── fdolmove.acd
+ │ │ ├── fdolpenny.acd
+ │ │ ├── fdrawgram.acd
+ │ │ ├── fdrawtree.acd
+ │ │ ├── ffactor.acd
+ │ │ ├── ffitch.acd
+ │ │ ├── ffreqboot.acd
+ │ │ ├── fgendist.acd
+ │ │ ├── fkitsch.acd
+ │ │ ├── fmix.acd
+ │ │ ├── fmove.acd
+ │ │ ├── fneighbor.acd
+ │ │ ├── fpars.acd
+ │ │ ├── fpenny.acd
+ │ │ ├── fproml.acd
+ │ │ ├── fpromlk.acd
+ │ │ ├── fprotdist.acd
+ │ │ ├── fprotpars.acd
+ │ │ ├── frestboot.acd
+ │ │ ├── frestdist.acd
+ │ │ ├── frestml.acd
+ │ │ ├── fretree.acd
+ │ │ ├── fseqboot.acd
+ │ │ ├── fseqbootall.acd
+ │ │ ├── ftreedist.acd
+ │ │ └── ftreedistpair.acd
+ │ └── doc
+ │ ├── html
+ │ │ └── embassy
+ │ │ └── phylipnew
+ │ │ ├── fclique.html
+ │ │ ├── fconsense.html
+ │ │ ├── fcontml.html
+ │ │ ├── fcontrast.html
+ │ │ ├── fdiscboot.html
+ │ │ ├── fdnacomp.html
+ │ │ ├── fdnadist.html
+ │ │ ├── fdnainvar.html
+ │ │ ├── fdnaml.html
+ │ │ ├── fdnamlk.html
+ │ │ ├── fdnamove.html
+ │ │ ├── fdnapars.html
+ │ │ ├── fdnapenny.html
+ │ │ ├── fdollop.html
+ │ │ ├── fdolmove.html
+ │ │ ├── fdolpenny.html
+ │ │ ├── fdrawgram.html
+ │ │ ├── fdrawtree.html
+ │ │ ├── ffactor.html
+ │ │ ├── ffitch.html
+ │ │ ├── ffreqboot.html
+ │ │ ├── fgendist.html
+ │ │ ├── fkitsch.html
+ │ │ ├── fmix.html
+ │ │ ├── fmove.html
+ │ │ ├── fneighbor.html
+ │ │ ├── fpars.html
+ │ │ ├── fpenny.html
+ │ │ ├── fproml.html
+ │ │ ├── fpromlk.html
+ │ │ ├── fprotdist.html
+ │ │ ├── fprotpars.html
+ │ │ ├── frestboot.html
+ │ │ ├── frestdist.html
+ │ │ ├── frestml.html
+ │ │ ├── fretree.html
+ │ │ ├── fseqbootall.html
+ │ │ ├── fseqboot.html
+ │ │ ├── ftreedist.html
+ │ │ ├── ftreedistpair.html
+ │ │ └── index.html
+ │ └── programs
+ │ └── text
+ │ ├── fclique.txt
+ │ ├── fconsense.txt
+ │ ├── fcontml.txt
+ │ ├── fcontrast.txt
+ │ ├── fdiscboot.txt
+ │ ├── fdnacomp.txt
+ │ ├── fdnadist.txt
+ │ ├── fdnainvar.txt
+ │ ├── fdnamlk.txt
+ │ ├── fdnaml.txt
+ │ ├── fdnamove.txt
+ │ ├── fdnapars.txt
+ │ ├── fdnapenny.txt
+ │ ├── fdollop.txt
+ │ ├── fdolmove.txt
+ │ ├── fdolpenny.txt
+ │ ├── fdrawgram.txt
+ │ ├── fdrawtree.txt
+ │ ├── ffactor.txt
+ │ ├── ffitch.txt
+ │ ├── ffreqboot.txt
+ │ ├── fgendist.txt
+ │ ├── fkitsch.txt
+ │ ├── fmix.txt
+ │ ├── fmove.txt
+ │ ├── fneighbor.txt
+ │ ├── fpars.txt
+ │ ├── fpenny.txt
+ │ ├── fpromlk.txt
+ │ ├── fproml.txt
+ │ ├── fprotdist.txt
+ │ ├── fprotpars.txt
+ │ ├── frestboot.txt
+ │ ├── frestdist.txt
+ │ ├── frestml.txt
+ │ ├── fretree.txt
+ │ ├── fseqbootall.txt
+ │ ├── fseqboot.txt
+ │ ├── ftreedistpair.txt
+ │ └── ftreedist.txt
+ └── PHYLIPNEW
+ └── data
+ ├── font1
+ ├── font2
+ ├── font3
+ ├── font4
+ ├── font5
+ └── font6
+
+15 directories, 170 files
diff --git a/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.660.ebuild b/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.660.ebuild
index c5ba6a540bf..129b42870a7 100644
--- a/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.660.ebuild
+++ b/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.660.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=7
EBO_DESCRIPTION="The Phylogeny Inference Package"
^ permalink raw reply related [flat|nested] 9+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/embassy-phylipnew/
@ 2021-03-13 12:30 David Seifert
0 siblings, 0 replies; 9+ messages in thread
From: David Seifert @ 2021-03-13 12:30 UTC (permalink / raw
To: gentoo-commits
commit: 4b12b75aff0f7ee23c1fabaf4ec8d6d28f8adf71
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Mar 13 12:29:59 2021 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Mar 13 12:29:59 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4b12b75a
sci-biology/embassy-phylipnew: Remove accidentally committed file
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: David Seifert <soap <AT> gentoo.org>
sci-biology/embassy-phylipnew/OLD | 188 --------------------------------------
1 file changed, 188 deletions(-)
diff --git a/sci-biology/embassy-phylipnew/OLD b/sci-biology/embassy-phylipnew/OLD
deleted file mode 100644
index 302219c1808..00000000000
--- a/sci-biology/embassy-phylipnew/OLD
+++ /dev/null
@@ -1,188 +0,0 @@
-/var/tmp/portage/sci-biology/embassy-phylipnew-3.69.660/image/
-└── usr
- ├── bin
- │ ├── fclique
- │ ├── fconsense
- │ ├── fcontml
- │ ├── fcontrast
- │ ├── fdiscboot
- │ ├── fdnacomp
- │ ├── fdnadist
- │ ├── fdnainvar
- │ ├── fdnaml
- │ ├── fdnamlk
- │ ├── fdnamove
- │ ├── fdnapars
- │ ├── fdnapenny
- │ ├── fdollop
- │ ├── fdolmove
- │ ├── fdolpenny
- │ ├── fdrawgram
- │ ├── fdrawtree
- │ ├── ffactor
- │ ├── ffitch
- │ ├── ffreqboot
- │ ├── fgendist
- │ ├── fkitsch
- │ ├── fmix
- │ ├── fmove
- │ ├── fneighbor
- │ ├── fpars
- │ ├── fpenny
- │ ├── fproml
- │ ├── fpromlk
- │ ├── fprotdist
- │ ├── fprotpars
- │ ├── frestboot
- │ ├── frestdist
- │ ├── frestml
- │ ├── fretree
- │ ├── fseqboot
- │ ├── fseqbootall
- │ ├── ftreedist
- │ └── ftreedistpair
- └── share
- ├── doc
- │ └── embassy-phylipnew-3.69.660
- │ ├── AUTHORS.bz2
- │ ├── ChangeLog.bz2
- │ └── README.bz2
- ├── EMBOSS
- │ ├── acd
- │ │ ├── fclique.acd
- │ │ ├── fconsense.acd
- │ │ ├── fcontml.acd
- │ │ ├── fcontrast.acd
- │ │ ├── fdiscboot.acd
- │ │ ├── fdnacomp.acd
- │ │ ├── fdnadist.acd
- │ │ ├── fdnainvar.acd
- │ │ ├── fdnaml.acd
- │ │ ├── fdnamlk.acd
- │ │ ├── fdnamove.acd
- │ │ ├── fdnapars.acd
- │ │ ├── fdnapenny.acd
- │ │ ├── fdollop.acd
- │ │ ├── fdolmove.acd
- │ │ ├── fdolpenny.acd
- │ │ ├── fdrawgram.acd
- │ │ ├── fdrawtree.acd
- │ │ ├── ffactor.acd
- │ │ ├── ffitch.acd
- │ │ ├── ffreqboot.acd
- │ │ ├── fgendist.acd
- │ │ ├── fkitsch.acd
- │ │ ├── fmix.acd
- │ │ ├── fmove.acd
- │ │ ├── fneighbor.acd
- │ │ ├── fpars.acd
- │ │ ├── fpenny.acd
- │ │ ├── fproml.acd
- │ │ ├── fpromlk.acd
- │ │ ├── fprotdist.acd
- │ │ ├── fprotpars.acd
- │ │ ├── frestboot.acd
- │ │ ├── frestdist.acd
- │ │ ├── frestml.acd
- │ │ ├── fretree.acd
- │ │ ├── fseqboot.acd
- │ │ ├── fseqbootall.acd
- │ │ ├── ftreedist.acd
- │ │ └── ftreedistpair.acd
- │ └── doc
- │ ├── html
- │ │ └── embassy
- │ │ └── phylipnew
- │ │ ├── fclique.html
- │ │ ├── fconsense.html
- │ │ ├── fcontml.html
- │ │ ├── fcontrast.html
- │ │ ├── fdiscboot.html
- │ │ ├── fdnacomp.html
- │ │ ├── fdnadist.html
- │ │ ├── fdnainvar.html
- │ │ ├── fdnaml.html
- │ │ ├── fdnamlk.html
- │ │ ├── fdnamove.html
- │ │ ├── fdnapars.html
- │ │ ├── fdnapenny.html
- │ │ ├── fdollop.html
- │ │ ├── fdolmove.html
- │ │ ├── fdolpenny.html
- │ │ ├── fdrawgram.html
- │ │ ├── fdrawtree.html
- │ │ ├── ffactor.html
- │ │ ├── ffitch.html
- │ │ ├── ffreqboot.html
- │ │ ├── fgendist.html
- │ │ ├── fkitsch.html
- │ │ ├── fmix.html
- │ │ ├── fmove.html
- │ │ ├── fneighbor.html
- │ │ ├── fpars.html
- │ │ ├── fpenny.html
- │ │ ├── fproml.html
- │ │ ├── fpromlk.html
- │ │ ├── fprotdist.html
- │ │ ├── fprotpars.html
- │ │ ├── frestboot.html
- │ │ ├── frestdist.html
- │ │ ├── frestml.html
- │ │ ├── fretree.html
- │ │ ├── fseqbootall.html
- │ │ ├── fseqboot.html
- │ │ ├── ftreedist.html
- │ │ ├── ftreedistpair.html
- │ │ └── index.html
- │ └── programs
- │ └── text
- │ ├── fclique.txt
- │ ├── fconsense.txt
- │ ├── fcontml.txt
- │ ├── fcontrast.txt
- │ ├── fdiscboot.txt
- │ ├── fdnacomp.txt
- │ ├── fdnadist.txt
- │ ├── fdnainvar.txt
- │ ├── fdnamlk.txt
- │ ├── fdnaml.txt
- │ ├── fdnamove.txt
- │ ├── fdnapars.txt
- │ ├── fdnapenny.txt
- │ ├── fdollop.txt
- │ ├── fdolmove.txt
- │ ├── fdolpenny.txt
- │ ├── fdrawgram.txt
- │ ├── fdrawtree.txt
- │ ├── ffactor.txt
- │ ├── ffitch.txt
- │ ├── ffreqboot.txt
- │ ├── fgendist.txt
- │ ├── fkitsch.txt
- │ ├── fmix.txt
- │ ├── fmove.txt
- │ ├── fneighbor.txt
- │ ├── fpars.txt
- │ ├── fpenny.txt
- │ ├── fpromlk.txt
- │ ├── fproml.txt
- │ ├── fprotdist.txt
- │ ├── fprotpars.txt
- │ ├── frestboot.txt
- │ ├── frestdist.txt
- │ ├── frestml.txt
- │ ├── fretree.txt
- │ ├── fseqbootall.txt
- │ ├── fseqboot.txt
- │ ├── ftreedistpair.txt
- │ └── ftreedist.txt
- └── PHYLIPNEW
- └── data
- ├── font1
- ├── font2
- ├── font3
- ├── font4
- ├── font5
- └── font6
-
-15 directories, 170 files
^ permalink raw reply related [flat|nested] 9+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/embassy-phylipnew/
@ 2024-09-23 0:16 Eli Schwartz
0 siblings, 0 replies; 9+ messages in thread
From: Eli Schwartz @ 2024-09-23 0:16 UTC (permalink / raw
To: gentoo-commits
commit: c094eb705d0d4686fb07ce1804d60667d0f8cabc
Author: Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
AuthorDate: Sun Sep 22 23:47:30 2024 +0000
Commit: Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
CommitDate: Mon Sep 23 00:15:49 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c094eb70
sci-biology/embassy-phylipnew: mark as LTO-unsafe
Upstream software has not released since 2013, stuck on CVS, with no
sourceforge activity since 7 years ago when they deleted some spam.
Closes: https://bugs.gentoo.org/862261
Signed-off-by: Eli Schwartz <eschwartz <AT> gentoo.org>
.../embassy-phylipnew/embassy-phylipnew-3.69.660-r1.ebuild | 14 ++++++++++++--
1 file changed, 12 insertions(+), 2 deletions(-)
diff --git a/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.660-r1.ebuild b/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.660-r1.ebuild
index d7dc57a64fc8..90833621fa75 100644
--- a/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.660-r1.ebuild
+++ b/sci-biology/embassy-phylipnew/embassy-phylipnew-3.69.660-r1.ebuild
@@ -1,11 +1,11 @@
-# Copyright 1999-2022 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
EBO_DESCRIPTION="The Phylogeny Inference Package"
-inherit autotools emboss-r3
+inherit autotools emboss-r3 flag-o-matic
LICENSE+=" free-noncomm"
@@ -21,3 +21,13 @@ src_prepare() {
default
eautoreconf
}
+
+src_configure() {
+ # -Werror=lto-type-mismatch
+ # https://bugs.gentoo.org/862261
+ #
+ # Upstream is dead since 2013.
+ filter-lto
+
+ emboss-r3_src_configure
+}
^ permalink raw reply related [flat|nested] 9+ messages in thread
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2015-08-27 13:47 Justin Lecher
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2019-12-28 13:56 Ulrich Müller
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