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* [gentoo-commits] proj/sci:master commit in: sci-biology/rum/
@ 2015-04-18  1:07 Martin Mokrejs
  0 siblings, 0 replies; 4+ messages in thread
From: Martin Mokrejs @ 2015-04-18  1:07 UTC (permalink / raw
  To: gentoo-commits

commit:     7516202601abbac750c7fb7ed7a8c52bafb16a49
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Apr 18 01:06:45 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Apr 18 01:06:45 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=75162026

sci-biology/rum: new package

Package-Manager: portage-2.2.18

 sci-biology/rum/ChangeLog          |  9 +++++++++
 sci-biology/rum/metadata.xml       |  9 +++++++++
 sci-biology/rum/rum-2.0.5.5.ebuild | 40 ++++++++++++++++++++++++++++++++++++++
 3 files changed, 58 insertions(+)

diff --git a/sci-biology/rum/ChangeLog b/sci-biology/rum/ChangeLog
new file mode 100644
index 0000000..3dd7b15
--- /dev/null
+++ b/sci-biology/rum/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/rum
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*rum-2.0.5.5 (18 Apr 2015)
+
+  18 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
+  +rum-2.0.5.5.ebuild:
+  sci-biology/rum: new package

diff --git a/sci-biology/rum/metadata.xml b/sci-biology/rum/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/rum/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>

diff --git a/sci-biology/rum/rum-2.0.5.5.ebuild b/sci-biology/rum/rum-2.0.5.5.ebuild
new file mode 100644
index 0000000..c8fc01b
--- /dev/null
+++ b/sci-biology/rum/rum-2.0.5.5.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit perl-module eutils
+
+DESCRIPTION="RNA-Seq Unified Mapper (digital normalization)"
+HOMEPAGE="https://github.com/itmat/rum/wiki"
+SRC_URI="https://github.com/itmat/rum/archive/v2.0.5_05.tar.gz"
+
+# stable
+#EGIT_REPO_URI="https://github.com/PGFI/rum/tags"
+
+# dev
+#EGIT_REPO_URI="https://github.com/PGFI/rum"
+
+LICENSE="UPennState"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="dev-lang/perl
+		dev-perl/Log-Log4perl
+		perl-core/autodie"
+RDEPEND="${DEPEND}
+	sci-biology/seqclean
+	sci-biology/blat
+	sci-biology/bowtie
+	sci-biology/seqclean"
+
+S="${WORKDIR}/${PN}-2.0.5_05"
+
+src_install(){
+	emake install
+	rm "${D}"/usr/lib64/perl5/vendor_perl/*/RUM/bowtie
+	rm "${D}"/usr/lib64/perl5/vendor_perl/*/RUM/blat
+	rm "${D}"/usr/lib64/perl5/vendor_perl/*/RUM/mdust
+}


^ permalink raw reply related	[flat|nested] 4+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/rum/
@ 2015-06-05 11:20 Justin Lecher
  0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher @ 2015-06-05 11:20 UTC (permalink / raw
  To: gentoo-commits

commit:     a24b771a65c03adcef67e3eaefb32aeba790122b
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Jun  5 11:08:31 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Jun  5 11:08:31 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=a24b771a

sci-biology/rum: Add github to remote-id in metadata.xml

Package-Manager: portage-2.2.20

 sci-biology/rum/ChangeLog    | 3 +++
 sci-biology/rum/metadata.xml | 3 +++
 2 files changed, 6 insertions(+)

diff --git a/sci-biology/rum/ChangeLog b/sci-biology/rum/ChangeLog
index 3dd7b15..279db7d 100644
--- a/sci-biology/rum/ChangeLog
+++ b/sci-biology/rum/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  05 Jun 2015; Justin Lecher <jlec@gentoo.org> metadata.xml:
+  sci-biology/rum: Add github to remote-id in metadata.xml
+
 *rum-2.0.5.5 (18 Apr 2015)
 
   18 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,

diff --git a/sci-biology/rum/metadata.xml b/sci-biology/rum/metadata.xml
index 2bc8930..e6b052f 100644
--- a/sci-biology/rum/metadata.xml
+++ b/sci-biology/rum/metadata.xml
@@ -6,4 +6,7 @@
     <email>mmokrejs@fold.natur.cuni.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
+  <upstream>
+    <remote-id type="github">itmat/rum/wiki</remote-id>
+  </upstream>
 </pkgmetadata>


^ permalink raw reply related	[flat|nested] 4+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/rum/
@ 2015-06-05 11:20 Justin Lecher
  0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher @ 2015-06-05 11:20 UTC (permalink / raw
  To: gentoo-commits

commit:     35c38b15a2dc73ae4e9a62ca1f2d17e37a56d685
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Jun  5 11:12:33 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Jun  5 11:12:33 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=35c38b15

sci-biology/rum: Use perl virtuals, add missing die; use PN for tarball

Package-Manager: portage-2.2.20

 sci-biology/rum/ChangeLog          |  3 +++
 sci-biology/rum/rum-2.0.5.5.ebuild | 14 ++++++--------
 2 files changed, 9 insertions(+), 8 deletions(-)

diff --git a/sci-biology/rum/ChangeLog b/sci-biology/rum/ChangeLog
index 279db7d..62ff2bf 100644
--- a/sci-biology/rum/ChangeLog
+++ b/sci-biology/rum/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  05 Jun 2015; Justin Lecher <jlec@gentoo.org> rum-2.0.5.5.ebuild:
+  sci-biology/rum: Use perl virtuals, add missing die; use PN for tarball
+
   05 Jun 2015; Justin Lecher <jlec@gentoo.org> metadata.xml:
   sci-biology/rum: Add github to remote-id in metadata.xml
 

diff --git a/sci-biology/rum/rum-2.0.5.5.ebuild b/sci-biology/rum/rum-2.0.5.5.ebuild
index c8fc01b..3411f20 100644
--- a/sci-biology/rum/rum-2.0.5.5.ebuild
+++ b/sci-biology/rum/rum-2.0.5.5.ebuild
@@ -8,7 +8,7 @@ inherit perl-module eutils
 
 DESCRIPTION="RNA-Seq Unified Mapper (digital normalization)"
 HOMEPAGE="https://github.com/itmat/rum/wiki"
-SRC_URI="https://github.com/itmat/rum/archive/v2.0.5_05.tar.gz"
+SRC_URI="https://github.com/itmat/rum/archive/v2.0.5_05.tar.gz -> ${P}.tar.gz"
 
 # stable
 #EGIT_REPO_URI="https://github.com/PGFI/rum/tags"
@@ -21,9 +21,9 @@ SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE=""
 
-DEPEND="dev-lang/perl
-		dev-perl/Log-Log4perl
-		perl-core/autodie"
+DEPEND="
+	dev-perl/Log-Log4perl
+	virtual/perl-autodie"
 RDEPEND="${DEPEND}
 	sci-biology/seqclean
 	sci-biology/blat
@@ -33,8 +33,6 @@ RDEPEND="${DEPEND}
 S="${WORKDIR}/${PN}-2.0.5_05"
 
 src_install(){
-	emake install
-	rm "${D}"/usr/lib64/perl5/vendor_perl/*/RUM/bowtie
-	rm "${D}"/usr/lib64/perl5/vendor_perl/*/RUM/blat
-	rm "${D}"/usr/lib64/perl5/vendor_perl/*/RUM/mdust
+	default
+	rm "${ED}"/usr/lib64/perl5/vendor_perl/*/RUM/{bowtie,blat,mdust} ]] die
 }


^ permalink raw reply related	[flat|nested] 4+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/rum/
@ 2021-03-06 13:50 Andrew Ammerlaan
  0 siblings, 0 replies; 4+ messages in thread
From: Andrew Ammerlaan @ 2021-03-06 13:50 UTC (permalink / raw
  To: gentoo-commits

commit:     17d2e58071c5fde0f28798734997a516c40cb12e
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar  6 13:49:30 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar  6 13:49:30 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=17d2e580

sci-biology/rum: EAPI bump

Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 .../rum/{rum-2.0.5.5.ebuild => rum-2.0.5.06.ebuild}   | 19 ++++++-------------
 1 file changed, 6 insertions(+), 13 deletions(-)

diff --git a/sci-biology/rum/rum-2.0.5.5.ebuild b/sci-biology/rum/rum-2.0.5.06.ebuild
similarity index 60%
rename from sci-biology/rum/rum-2.0.5.5.ebuild
rename to sci-biology/rum/rum-2.0.5.06.ebuild
index 015bb1499..7234c72e7 100644
--- a/sci-biology/rum/rum-2.0.5.5.ebuild
+++ b/sci-biology/rum/rum-2.0.5.06.ebuild
@@ -1,24 +1,17 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
 
-inherit perl-module eutils
+inherit perl-module
 
 DESCRIPTION="RNA-Seq Unified Mapper (digital normalization)"
 HOMEPAGE="https://github.com/itmat/rum/wiki"
-SRC_URI="https://github.com/itmat/rum/archive/v2.0.5_05.tar.gz -> ${P}.tar.gz"
-
-# stable
-#EGIT_REPO_URI="https://github.com/PGFI/rum/tags"
-
-# dev
-#EGIT_REPO_URI="https://github.com/PGFI/rum"
+SRC_URI="https://github.com/itmat/rum/archive/v$(ver_rs 3-4 _).tar.gz -> ${P}.tar.gz"
 
 LICENSE="UPennState"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
-IUSE=""
 
 DEPEND="
 	dev-perl/Log-Log4perl
@@ -29,9 +22,9 @@ RDEPEND="${DEPEND}
 	sci-biology/bowtie
 	sci-biology/seqclean"
 
-S="${WORKDIR}/${PN}-2.0.5_05"
+S="${WORKDIR}/${PN}-$(ver_rs 3-4 _)"
 
 src_install(){
 	default
-	rm "${ED}"/usr/lib64/perl5/vendor_perl/*/RUM/{bowtie,blat,mdust} ]] die
+	rm "${ED}"/usr/lib64/perl5/vendor_perl/*/RUM/{bowtie,blat,mdust} ]] || die
 }


^ permalink raw reply related	[flat|nested] 4+ messages in thread

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