[gentoo-commits] proj/sci:master commit in: sci-biology/caftools/

[gentoo-commits] proj/sci:master commit in: sci-biology/caftools/

[Martin Mokrejs]

commit:     0d0e14617234a9eacb93ff7fb44b45a957941d54
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jul  4 17:45:32 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jul  4 17:45:32 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0d0e1461

sci-biology/caftools: clarified package description

Package-Manager: portage-2.2.7

---
 sci-biology/caftools/ChangeLog             | 7 +++++--
 sci-biology/caftools/caftools-2.0.2.ebuild | 2 +-
 2 files changed, 6 insertions(+), 3 deletions(-)

diff --git a/sci-biology/caftools/ChangeLog b/sci-biology/caftools/ChangeLog
index af2ad47..12f9e49 100644
--- a/sci-biology/caftools/ChangeLog
+++ b/sci-biology/caftools/ChangeLog
@@ -1,8 +1,11 @@
 # ChangeLog for sci-biology/caftools
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  04 Jul 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  caftools-2.0.2.ebuild:
+  sci-biology/caftools: clarified package description
+
   16 Jun 2013; Justin Lecher <jlec@gentoo.org> -caftools-2.0.ebuild,
   caftools-2.0.2.ebuild, metadata.xml:
   Drop old; Bump to EAPI=5 and fix license
-

diff --git a/sci-biology/caftools/caftools-2.0.2.ebuild b/sci-biology/caftools/caftools-2.0.2.ebuild
index 4750f15..07c1185 100644
--- a/sci-biology/caftools/caftools-2.0.2.ebuild
+++ b/sci-biology/caftools/caftools-2.0.2.ebuild
@@ -6,7 +6,7 @@ EAPI=5
 
 inherit eutils
 
-DESCRIPTION="CAF is a text format for describing sequence assemblies"
+DESCRIPTION="Manipulate CAF files and convert to GAP4 format (not GAP5), ACE, PHRAP"
 HOMEPAGE="http://www.sanger.ac.uk/resources/software/caf/"
 SRC_URI="
 	ftp://ftp.sanger.ac.uk/pub/PRODUCTION_SOFTWARE/src/${P}.tar.gz

[gentoo-commits] proj/sci:master commit in: sci-biology/caftools/

[Martin Mokrejs]

commit:     16c508360a2a5898ca9382563e4ed9f8f02b9456
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Apr 17 22:06:39 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Apr 17 22:06:39 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=16c50836

sci-biology/caftools: added a link to the original publication; Simon Dear <sd <AT> sanger.ac.uk>: host extmail.sanger.ac.uk[193.62.203.50] said: 550 unknown

Package-Manager: portage-2.2.18

 sci-biology/caftools/ChangeLog             | 7 ++++++-
 sci-biology/caftools/caftools-2.0.2.ebuild | 5 +++--
 2 files changed, 9 insertions(+), 3 deletions(-)

diff --git a/sci-biology/caftools/ChangeLog b/sci-biology/caftools/ChangeLog
index 12f9e49..682f31e 100644
--- a/sci-biology/caftools/ChangeLog
+++ b/sci-biology/caftools/ChangeLog
@@ -1,7 +1,12 @@
 # ChangeLog for sci-biology/caftools
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  17 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  caftools-2.0.2.ebuild:
+  sci-biology/caftools: added a link to the original publication; Simon Dear
+  <sd@sanger.ac.uk>: host extmail.sanger.ac.uk[193.62.203.50] said: 550 unknown
+
   04 Jul 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
   caftools-2.0.2.ebuild:
   sci-biology/caftools: clarified package description

diff --git a/sci-biology/caftools/caftools-2.0.2.ebuild b/sci-biology/caftools/caftools-2.0.2.ebuild
index 07c1185..56d61dd 100644
--- a/sci-biology/caftools/caftools-2.0.2.ebuild
+++ b/sci-biology/caftools/caftools-2.0.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
@@ -7,7 +7,8 @@ EAPI=5
 inherit eutils
 
 DESCRIPTION="Manipulate CAF files and convert to GAP4 format (not GAP5), ACE, PHRAP"
-HOMEPAGE="http://www.sanger.ac.uk/resources/software/caf/"
+HOMEPAGE="http://www.sanger.ac.uk/resources/software/caf
+	http://www.ncbi.nlm.nih.gov/pmc/articles/PMC310697"
 SRC_URI="
 	ftp://ftp.sanger.ac.uk/pub/PRODUCTION_SOFTWARE/src/${P}.tar.gz
 	ftp://ftp.sanger.ac.uk/pub/PRODUCTION_SOFTWARE/src/${PN}-2.0.tar.gz"

[gentoo-commits] proj/sci:master commit in: sci-biology/caftools/

[Andrew Ammerlaan]

commit:     797870a9a25a5365c60616883f9266b69b150e13
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Wed Jan 20 08:40:40 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Wed Jan 20 08:40:40 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=797870a9

sci-biology/caftools: update homepage

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/caftools/caftools-2.0.2.ebuild | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/sci-biology/caftools/caftools-2.0.2.ebuild b/sci-biology/caftools/caftools-2.0.2.ebuild
index a722379b8..d0456c536 100644
--- a/sci-biology/caftools/caftools-2.0.2.ebuild
+++ b/sci-biology/caftools/caftools-2.0.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
@@ -6,8 +6,7 @@ EAPI=5
 inherit eutils
 
 DESCRIPTION="Manipulate CAF files and convert to GAP4 format (not GAP5), ACE, PHRAP"
-HOMEPAGE="http://www.sanger.ac.uk/resources/software/caf
-	http://www.ncbi.nlm.nih.gov/pmc/articles/PMC310697"
+HOMEPAGE="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC310697/"
 SRC_URI="
 	ftp://ftp.sanger.ac.uk/pub/PRODUCTION_SOFTWARE/src/${P}.tar.gz
 	ftp://ftp.sanger.ac.uk/pub/PRODUCTION_SOFTWARE/src/${PN}-2.0.tar.gz"

[gentoo-commits] proj/sci:master commit in: sci-biology/caftools/

[Andrew Ammerlaan]

commit:     fe719ea8ae9bea1d91d0ce307a46c1c3ceef7682
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Wed Feb  3 08:06:33 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Wed Feb  3 08:06:33 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=fe719ea8

sci-biology/caftools: EAPI bump

Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/caftools/caftools-2.0.2.ebuild | 11 ++++++-----
 1 file changed, 6 insertions(+), 5 deletions(-)

diff --git a/sci-biology/caftools/caftools-2.0.2.ebuild b/sci-biology/caftools/caftools-2.0.2.ebuild
index d0456c536..7d58f3375 100644
--- a/sci-biology/caftools/caftools-2.0.2.ebuild
+++ b/sci-biology/caftools/caftools-2.0.2.ebuild
@@ -1,9 +1,7 @@
 # Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
-
-inherit eutils
+EAPI=7
 
 DESCRIPTION="Manipulate CAF files and convert to GAP4 format (not GAP5), ACE, PHRAP"
 HOMEPAGE="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC310697/"
@@ -14,15 +12,18 @@ SRC_URI="
 LICENSE="GRL"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
-IUSE=""
 
 DEPEND="
 	sci-libs/io_lib
 	dev-lang/perl"
 RDEPEND="${DEPEND}"
 
+PATCHES=(
+	"${FILESDIR}"/Makefile.in-"${PV}".patch
+)
+
 src_prepare(){
-	epatch "${FILESDIR}"/Makefile.in-"${PV}".patch
+	default
 	mv "${WORKDIR}"/caftools-2.0/man/*.{1,5} "${S}"/man/ || die
 }