* [gentoo-commits] proj/sci:master commit in: sci-biology/metaseq/
@ 2015-04-13 6:25 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2015-04-13 6:25 UTC (permalink / raw
To: gentoo-commits
commit: 9732eabf702cbf02c054834a7b36463f48f9e2c7
Author: layman <layman <AT> localhost>
AuthorDate: Sun Apr 12 16:08:32 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Apr 12 16:08:32 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9732eabf
sci-biology/metaseq: add metaseq
Package-Manager: portage-2.2.14-prefix
sci-biology/metaseq/ChangeLog | 9 +++++++++
sci-biology/metaseq/metadata.xml | 9 +++++++++
sci-biology/metaseq/metaseq-0.5.3.ebuild | 29 +++++++++++++++++++++++++++++
3 files changed, 47 insertions(+)
diff --git a/sci-biology/metaseq/ChangeLog b/sci-biology/metaseq/ChangeLog
new file mode 100644
index 0000000..4f473fe
--- /dev/null
+++ b/sci-biology/metaseq/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/metaseq
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*metaseq-0.5.3 (12 Apr 2015)
+
+ 12 Apr 2015; Michael Schubert <mschu.dev@gmail.com> +metadata.xml,
+ +metaseq-0.5.3.ebuild:
+ sci-biology/metaseq: add metaseq
diff --git a/sci-biology/metaseq/metadata.xml b/sci-biology/metaseq/metadata.xml
new file mode 100644
index 0000000..b7551a6
--- /dev/null
+++ b/sci-biology/metaseq/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mschu.dev@gmail.com</email>
+ <name>Michael Schubert</name>
+ </maintainer>
+</pkgmetadata>
diff --git a/sci-biology/metaseq/metaseq-0.5.3.ebuild b/sci-biology/metaseq/metaseq-0.5.3.ebuild
new file mode 100644
index 0000000..3c65dbf
--- /dev/null
+++ b/sci-biology/metaseq/metaseq-0.5.3.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1
+
+DESCRIPTION="Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data"
+HOMEPAGE="http://pythonhosted.org/metaseq/"
+SRC_URI="https://github.com/daler/metaseq/archive/v${PV}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+IUSE=""
+
+DEPEND="dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/pandas[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/pyyaml[${PYTHON_USEDEP}]
+ sci-libs/scipy[${PYTHON_USEDEP}]
+ sci-biology/pysam[${PYTHON_USEDEP}]
+ sci-biology/pybedtools[${PYTHON_USEDEP}]
+ sci-biology/bx-python[${PYTHON_USEDEP}]
+ sci-biology/gffutils[${PYTHON_USEDEP}]
+ sci-biology/samtools[${PYTHON_USEDEP}]"
+RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/metaseq/
@ 2015-04-13 6:25 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2015-04-13 6:25 UTC (permalink / raw
To: gentoo-commits
commit: 72446285bc26c2b1efaa0f77ea025e61dba5903f
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Apr 13 06:23:32 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Apr 13 06:23:32 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=72446285
sci-biology/metaseq: Streamline ebuild
Package-Manager: portage-2.2.18
RepoMan-Options: --force
sci-biology/metaseq/ChangeLog | 3 +++
sci-biology/metaseq/metaseq-0.5.3.ebuild | 19 +++++++++++--------
2 files changed, 14 insertions(+), 8 deletions(-)
diff --git a/sci-biology/metaseq/ChangeLog b/sci-biology/metaseq/ChangeLog
index 4f473fe..a61a470 100644
--- a/sci-biology/metaseq/ChangeLog
+++ b/sci-biology/metaseq/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 13 Apr 2015; Justin Lecher <jlec@gentoo.org> metaseq-0.5.3.ebuild:
+ sci-biology/metaseq: Streamline ebuild
+
*metaseq-0.5.3 (12 Apr 2015)
12 Apr 2015; Michael Schubert <mschu.dev@gmail.com> +metadata.xml,
diff --git a/sci-biology/metaseq/metaseq-0.5.3.ebuild b/sci-biology/metaseq/metaseq-0.5.3.ebuild
index 3c65dbf..c75c4d8 100644
--- a/sci-biology/metaseq/metaseq-0.5.3.ebuild
+++ b/sci-biology/metaseq/metaseq-0.5.3.ebuild
@@ -10,20 +10,23 @@ inherit distutils-r1
DESCRIPTION="Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data"
HOMEPAGE="http://pythonhosted.org/metaseq/"
-SRC_URI="https://github.com/daler/metaseq/archive/v${PV}.tar.gz"
+SRC_URI="https://github.com/daler/metaseq/archive/v${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="MIT"
SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE=""
-DEPEND="dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/pandas[${PYTHON_USEDEP}]
+RDEPEND="
dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/pandas[${PYTHON_USEDEP}]
dev-python/pyyaml[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
- sci-biology/pysam[${PYTHON_USEDEP}]
- sci-biology/pybedtools[${PYTHON_USEDEP}]
sci-biology/bx-python[${PYTHON_USEDEP}]
sci-biology/gffutils[${PYTHON_USEDEP}]
- sci-biology/samtools[${PYTHON_USEDEP}]"
-RDEPEND="${DEPEND}"
+ sci-biology/pysam[${PYTHON_USEDEP}]
+ sci-biology/pybedtools[${PYTHON_USEDEP}]
+ sci-biology/samtools[${PYTHON_USEDEP}]
+ sci-libs/scipy[${PYTHON_USEDEP}]
+ "
+DEPEND="${RDEPEND}"
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/metaseq/
@ 2015-06-06 10:23 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2015-06-06 10:23 UTC (permalink / raw
To: gentoo-commits
commit: 5d5cc9263ffad8242d0dca38f5fae786452fdae3
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Jun 6 10:12:26 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jun 6 10:12:26 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5d5cc926
sci-biology/metaseq: Add github to remote-id in metadata.xml
Package-Manager: portage-2.2.20
sci-biology/metaseq/ChangeLog | 3 +++
sci-biology/metaseq/metadata.xml | 3 +++
2 files changed, 6 insertions(+)
diff --git a/sci-biology/metaseq/ChangeLog b/sci-biology/metaseq/ChangeLog
index a61a470..058230a 100644
--- a/sci-biology/metaseq/ChangeLog
+++ b/sci-biology/metaseq/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 06 Jun 2015; Justin Lecher <jlec@gentoo.org> metadata.xml:
+ sci-biology/metaseq: Add github to remote-id in metadata.xml
+
13 Apr 2015; Justin Lecher <jlec@gentoo.org> metaseq-0.5.3.ebuild:
sci-biology/metaseq: Streamline ebuild
diff --git a/sci-biology/metaseq/metadata.xml b/sci-biology/metaseq/metadata.xml
index b7551a6..8174cbd 100644
--- a/sci-biology/metaseq/metadata.xml
+++ b/sci-biology/metaseq/metadata.xml
@@ -6,4 +6,7 @@
<email>mschu.dev@gmail.com</email>
<name>Michael Schubert</name>
</maintainer>
+ <upstream>
+ <remote-id type="github">daler/metaseq</remote-id>
+ </upstream>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/metaseq/
@ 2017-01-29 14:20 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2017-01-29 14:20 UTC (permalink / raw
To: gentoo-commits
commit: 7dd418c9e08883d2472d70d3e402a59cfb8e7221
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jan 29 14:07:22 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jan 29 14:07:22 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7dd418c9
sci-biology/metaseq: QA fixes
Bump to EAPI 6
add missing slot operator
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/metaseq/metaseq-0.5.3.ebuild | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/sci-biology/metaseq/metaseq-0.5.3.ebuild b/sci-biology/metaseq/metaseq-0.5.3.ebuild
index 0713206..9a0ee2f 100644
--- a/sci-biology/metaseq/metaseq-0.5.3.ebuild
+++ b/sci-biology/metaseq/metaseq-0.5.3.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=5
+EAPI=6
PYTHON_COMPAT=( python2_7 )
@@ -26,7 +26,7 @@ RDEPEND="
sci-biology/gffutils[${PYTHON_USEDEP}]
sci-biology/pysam[${PYTHON_USEDEP}]
sci-biology/pybedtools[${PYTHON_USEDEP}]
- sci-biology/samtools[${PYTHON_USEDEP}]
+ sci-biology/samtools:0[${PYTHON_USEDEP}]
sci-libs/scipy[${PYTHON_USEDEP}]
"
DEPEND="${RDEPEND}"
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/metaseq/
@ 2020-09-27 7:37 Horea Christian
0 siblings, 0 replies; 5+ messages in thread
From: Horea Christian @ 2020-09-27 7:37 UTC (permalink / raw
To: gentoo-commits
commit: 43c60b00d2a62741a2368f2c86a52ec4e771b4d7
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sun Sep 27 07:36:39 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Sep 27 07:36:39 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=43c60b00
sci-biology/metaseq: removed discontinued package
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/metaseq/metadata.xml | 15 ---------------
sci-biology/metaseq/metaseq-0.5.3.ebuild | 31 -------------------------------
2 files changed, 46 deletions(-)
diff --git a/sci-biology/metaseq/metadata.xml b/sci-biology/metaseq/metadata.xml
deleted file mode 100644
index 64cf80c39..000000000
--- a/sci-biology/metaseq/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mschu.dev@gmail.com</email>
- <name>Michael Schubert</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="github">daler/metaseq</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/sci-biology/metaseq/metaseq-0.5.3.ebuild b/sci-biology/metaseq/metaseq-0.5.3.ebuild
deleted file mode 100644
index c00aa498b..000000000
--- a/sci-biology/metaseq/metaseq-0.5.3.ebuild
+++ /dev/null
@@ -1,31 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1
-
-DESCRIPTION="Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data"
-HOMEPAGE="http://pythonhosted.org/metaseq/"
-SRC_URI="https://github.com/daler/metaseq/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/pandas[${PYTHON_USEDEP}]
- dev-python/pyyaml[${PYTHON_USEDEP}]
- sci-biology/bx-python[${PYTHON_USEDEP}]
- sci-biology/gffutils[${PYTHON_USEDEP}]
- sci-biology/pysam[${PYTHON_USEDEP}]
- sci-biology/pybedtools[${PYTHON_USEDEP}]
- sci-biology/samtools:0[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
- "
-DEPEND="${RDEPEND}"
^ permalink raw reply related [flat|nested] 5+ messages in thread
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