From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 4DB74138CBF for ; Wed, 18 Mar 2015 07:23:42 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 6E077E0B04; Wed, 18 Mar 2015 07:23:41 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id A3476E0B03 for ; Wed, 18 Mar 2015 07:23:40 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 9C117340AA5 for ; Wed, 18 Mar 2015 07:23:39 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 4471613FD7 for ; Wed, 18 Mar 2015 07:23:35 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1426663402.ba80f4042addbeb24766f8763c60e1322f4ac5bc.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/discrover/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/discrover/ChangeLog sci-biology/discrover/discrover-1.5.2.ebuild sci-biology/discrover/discrover-1.6.0.ebuild sci-biology/discrover/discrover-9999.ebuild sci-biology/discrover/metadata.xml X-VCS-Directories: sci-biology/discrover/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: ba80f4042addbeb24766f8763c60e1322f4ac5bc X-VCS-Branch: master Date: Wed, 18 Mar 2015 07:23:35 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 4953de6a-40d1-48ae-8976-0c59d51fc8d1 X-Archives-Hash: 531bdedc9f51812e205f3618c4f968ed commit: ba80f4042addbeb24766f8763c60e1322f4ac5bc Author: Jonas Maaskola maaskola de> AuthorDate: Wed Mar 18 00:09:04 2015 +0000 Commit: Justin Lecher gentoo org> CommitDate: Wed Mar 18 07:23:22 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ba80f404 sci-biology/discrover: version bump; drop USE flag Package-Manager: portage-2.2.14 sci-biology/discrover/ChangeLog | 6 ++++++ ...scrover-1.5.2.ebuild => discrover-1.6.0.ebuild} | 18 ++--------------- sci-biology/discrover/discrover-9999.ebuild | 18 ++--------------- sci-biology/discrover/metadata.xml | 23 ++++++++++------------ 4 files changed, 20 insertions(+), 45 deletions(-) diff --git a/sci-biology/discrover/ChangeLog b/sci-biology/discrover/ChangeLog index aba75b4..f4e2dcd 100644 --- a/sci-biology/discrover/ChangeLog +++ b/sci-biology/discrover/ChangeLog @@ -2,6 +2,12 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*discrover-1.6.0 (18 Mar 2015) + + 18 Mar 2015; Jonas Maaskola +discrover-1.6.0.ebuild, + -discrover-1.5.2.ebuild, discrover-9999.ebuild, metadata.xml: + sci-biology/discrover: version bump; drop USE flag + 18 Feb 2015; Justin Lecher discrover-1.5.2.ebuild, discrover-9999.ebuild, metadata.xml: sci-biology/discrover: fix SLOT operators; correct ruby deps diff --git a/sci-biology/discrover/discrover-1.5.2.ebuild b/sci-biology/discrover/discrover-1.6.0.ebuild similarity index 83% rename from sci-biology/discrover/discrover-1.5.2.ebuild rename to sci-biology/discrover/discrover-1.6.0.ebuild index f0992e2..5f1281c 100644 --- a/sci-biology/discrover/discrover-1.5.2.ebuild +++ b/sci-biology/discrover/discrover-1.6.0.ebuild @@ -3,11 +3,7 @@ # $Header: $ EAPI=5 - -USE_RUBY="ruby19" -RUBY_OPTIONAL=yes - -inherit cmake-utils ruby-fakegem +inherit cmake-utils DESCRIPTION="A sequence motif discovery tool that uses discriminative learning" HOMEPAGE="https://github.com/maaskola/discrover" @@ -16,21 +12,12 @@ SRC_URI="https://github.com/maaskola/discrover/archive/${PV}.tar.gz -> ${P}.tar. LICENSE="GPL-3+" SLOT="0" KEYWORDS="~amd64 ~x86" -IUSE="+cairo dreme doc +lto tikzlogo misc_scripts +rmathlib tcmalloc" +IUSE="+cairo dreme doc +lto misc_scripts +rmathlib tcmalloc" RDEPEND=" dev-libs/boost cairo? ( x11-libs/cairo ) dreme? ( sci-biology/meme ) - tikzlogo? ( - $(ruby_implementations_depend) - dev-texlive/texlive-latex - dev-texlive/texlive-latexextra - dev-tex/pgf - dev-tex/xcolor - media-gfx/imagemagick - ) - misc_scripts? ( $(ruby_implementations_depend) ) rmathlib? ( dev-lang/R ) tcmalloc? ( dev-util/google-perftools ) " @@ -58,7 +45,6 @@ src_configure() { $(cmake-utils_use_with dreme DREME) $(cmake-utils_use_with doc DOC) $(cmake-utils_use_with lto LTO) - $(cmake-utils_use_with tikzlogo TIKZLOGO) $(cmake-utils_use_with misc_scripts MISC_SCRIPTS) $(cmake-utils_use_with rmathlib RMATHLIB) $(cmake-utils_use_with tcmalloc TCMALLOC) diff --git a/sci-biology/discrover/discrover-9999.ebuild b/sci-biology/discrover/discrover-9999.ebuild index 8131e9b..6958803 100644 --- a/sci-biology/discrover/discrover-9999.ebuild +++ b/sci-biology/discrover/discrover-9999.ebuild @@ -3,11 +3,7 @@ # $Header: $ EAPI=5 - -USE_RUBY="ruby19" -RUBY_OPTIONAL=yes - -inherit cmake-utils git-r3 ruby-fakegem +inherit cmake-utils git-r3 DESCRIPTION="A sequence motif discovery tool that uses discriminative learning" HOMEPAGE="https://github.com/maaskola/discrover" @@ -17,21 +13,12 @@ EGIT_REPO_URI="https://github.com/maaskola/${PN}" LICENSE="GPL-3+" SLOT="0" KEYWORDS="~amd64 ~x86" -IUSE="+cairo dreme doc +lto tikzlogo misc_scripts +rmathlib tcmalloc" +IUSE="+cairo dreme doc +lto misc_scripts +rmathlib tcmalloc" RDEPEND=" dev-libs/boost cairo? ( x11-libs/cairo ) dreme? ( sci-biology/meme ) - tikzlogo? ( - $(ruby_implementations_depend) - dev-texlive/texlive-latex - dev-texlive/texlive-latexextra - dev-tex/pgf - dev-tex/xcolor - media-gfx/imagemagick - ) - misc_scripts? ( $(ruby_implementations_depend) ) rmathlib? ( dev-lang/R ) tcmalloc? ( dev-util/google-perftools ) " @@ -59,7 +46,6 @@ src_configure() { $(cmake-utils_use_with dreme DREME) $(cmake-utils_use_with doc DOC) $(cmake-utils_use_with lto LTO) - $(cmake-utils_use_with tikzlogo TIKZLOGO) $(cmake-utils_use_with misc_scripts MISC_SCRIPTS) $(cmake-utils_use_with rmathlib RMATHLIB) $(cmake-utils_use_with tcmalloc TCMALLOC) diff --git a/sci-biology/discrover/metadata.xml b/sci-biology/discrover/metadata.xml index 6bfaf6c..fb652d7 100644 --- a/sci-biology/discrover/metadata.xml +++ b/sci-biology/discrover/metadata.xml @@ -7,22 +7,19 @@ - Use Cairo for sequence logo plotting capabilities - + Use Cairo for sequence logo plotting capabilities + - Enable usage of DREME from the MEME package for seeding - + Enable usage of DREME from the MEME package for seeding + - Compile with link-time optimization (LTO) - - - Enable LaTeX/TikZ based ruby script for sequence logo drawing - + Compile with link-time optimization (LTO) + - Install miscellaneous scripts, e.g. for sequence length statistics - + Install miscellaneous scripts + - Link to the standalone Rmathlib for statistical routines - + Link to the standalone Rmathlib for statistical routines +