From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/scaffold_builder/
Date: Fri, 30 Jan 2015 12:48:29 +0000 (UTC) [thread overview]
Message-ID: <1422621985.f90c619958049fd0417d0a27d42cf521e78bd8a9.mmokrejs@gentoo> (raw)
commit: f90c619958049fd0417d0a27d42cf521e78bd8a9
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jan 30 12:46:25 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jan 30 12:46:25 2015 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f90c6199
version bump
Package-Manager: portage-2.2.15
---
sci-biology/scaffold_builder/ChangeLog | 8 +++++++-
...20130403.ebuild => scaffold_builder-20131122.ebuild} | 17 +++++++++--------
2 files changed, 16 insertions(+), 9 deletions(-)
diff --git a/sci-biology/scaffold_builder/ChangeLog b/sci-biology/scaffold_builder/ChangeLog
index 1dec7cf..5663f61 100644
--- a/sci-biology/scaffold_builder/ChangeLog
+++ b/sci-biology/scaffold_builder/ChangeLog
@@ -1,7 +1,13 @@
# ChangeLog for sci-biology/scaffold_builder
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+*scaffold_builder-20131122 (30 Jan 2015)
+
+ 30 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +scaffold_builder-20131122.ebuild, -scaffold_builder-20130403.ebuild:
+ version bump
+
16 Sep 2014; Christoph Junghans <ottxor@gentoo.org>
scaffold_builder-20130403.ebuild:
added license
diff --git a/sci-biology/scaffold_builder/scaffold_builder-20130403.ebuild b/sci-biology/scaffold_builder/scaffold_builder-20131122.ebuild
similarity index 64%
rename from sci-biology/scaffold_builder/scaffold_builder-20130403.ebuild
rename to sci-biology/scaffold_builder/scaffold_builder-20131122.ebuild
index 9a4446d..dc14a4d 100644
--- a/sci-biology/scaffold_builder/scaffold_builder-20130403.ebuild
+++ b/sci-biology/scaffold_builder/scaffold_builder-20131122.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
@@ -8,14 +8,14 @@ S="${WORKDIR}"
DESCRIPTION="Combine FASTA contigs from a de novo assembly into scaffolds using a reference assembly"
HOMEPAGE="http://sourceforge.net/projects/scaffold-b/"
-SRC_URI="http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2.py
+SRC_URI="http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2.1.zip
http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2_help.doc
http://downloads.sourceforge.net/project/scaffold-b/Manual_v2.1.pdf"
#http://www.scfbm.org/content/8/1/23
LICENSE="CC-BY-2.0"
SLOT="0"
-KEYWORDS=""
+KEYWORDS="~amd64"
IUSE=""
DEPEND=""
@@ -23,10 +23,11 @@ RDEPEND="${DEPEND}
dev-lang/python"
src_install(){
- echo "#! /usr/bin/env python" > scaffold_builder_v2.py || die
- cat "${DISTDIR}"/scaffold_builder_v2.py >> scaffold_builder_v2.py || die
- dobin scaffold_builder_v2.py
+ echo "#! /usr/bin/env python" > scaffold_builder.pyy || die
+ cat scaffold_builder.py >> scaffold_builder.pyy || die
+ mv scaffold_builder.pyy scaffold_builder.py || die
+ dobin scaffold_builder.py
dodoc "${DISTDIR}"/scaffold_builder_v2_help.doc
- cp "${DISTDIR}"/Manual_v2.1.pdf scaffold_builder_v2_Manual.pdf || die
- dodoc scaffold_builder_v2_Manual.pdf
+ cp -p "${DISTDIR}"/Manual_v2.1.pdf scaffold_builder.pdf || die
+ dodoc scaffold_builder.pdf
}
next reply other threads:[~2015-01-30 12:48 UTC|newest]
Thread overview: 9+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-01-30 12:48 Martin Mokrejs [this message]
-- strict thread matches above, loose matches on Subject: below --
2021-02-01 4:51 [gentoo-commits] proj/sci:master commit in: sci-biology/scaffold_builder/ Andrew Ammerlaan
2021-01-19 16:35 Andrew Ammerlaan
2016-03-29 22:36 Martin Mokrejs
2015-09-23 10:19 Justin Lecher
2015-05-26 21:43 Martin Mokrejs
2015-05-26 21:34 Martin Mokrejs
2014-09-16 4:07 Christoph Junghans
2014-03-23 20:32 Martin Mokrejs
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