From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 60305138ACF for ; Thu, 15 Jan 2015 15:57:27 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 81A0DE08C4; Thu, 15 Jan 2015 15:57:26 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id BB1C7E08C4 for ; Thu, 15 Jan 2015 15:57:25 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id C6DC13406E8 for ; Thu, 15 Jan 2015 15:57:24 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 6DF4FFA3B for ; Thu, 15 Jan 2015 15:57:23 +0000 (UTC) From: "Christoph Junghans" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Christoph Junghans" Message-ID: <1421337399.1ed8090c989cf72046e206e4daaf02222c4029a5.ottxor@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/bcftools/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/bcftools/ChangeLog sci-biology/bcftools/bcftools-1.1.ebuild sci-biology/bcftools/metadata.xml X-VCS-Directories: sci-biology/bcftools/ X-VCS-Committer: ottxor X-VCS-Committer-Name: Christoph Junghans X-VCS-Revision: 1ed8090c989cf72046e206e4daaf02222c4029a5 X-VCS-Branch: master Date: Thu, 15 Jan 2015 15:57:23 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 465b6e28-1e13-43b4-87f8-dabb457f3d10 X-Archives-Hash: 804d3028af954e0323944f0a4f9ba9e4 commit: 1ed8090c989cf72046e206e4daaf02222c4029a5 Author: Christoph Junghans gentoo org> AuthorDate: Thu Jan 15 15:56:39 2015 +0000 Commit: Christoph Junghans gentoo org> CommitDate: Thu Jan 15 15:56:39 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1ed8090c Revert "sci-biology/bcftools: new package: compiles against bundled sci-libs/htslib-1.1 but does not install it" Missing license. This reverts commit 46558c3fddec519dc1b598612c6aadd022dc2aab. --- sci-biology/bcftools/ChangeLog | 10 ---------- sci-biology/bcftools/bcftools-1.1.ebuild | 26 -------------------------- sci-biology/bcftools/metadata.xml | 9 --------- 3 files changed, 45 deletions(-) diff --git a/sci-biology/bcftools/ChangeLog b/sci-biology/bcftools/ChangeLog deleted file mode 100644 index 4e0a781..0000000 --- a/sci-biology/bcftools/ChangeLog +++ /dev/null @@ -1,10 +0,0 @@ -# ChangeLog for sci-biology/bcftools -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: $ - -*bcftools-1.1 (14 Jan 2015) - - 14 Jan 2015; Martin Mokrejs - +bcftools-1.1.ebuild, +metadata.xml: - sci-biology/bcftools: new package: compiles against bundled sci- - libs/htslib-1.1 but does not install it diff --git a/sci-biology/bcftools/bcftools-1.1.ebuild b/sci-biology/bcftools/bcftools-1.1.ebuild deleted file mode 100644 index e3f446f..0000000 --- a/sci-biology/bcftools/bcftools-1.1.ebuild +++ /dev/null @@ -1,26 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI=5 - -DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" -HOMEPAGE="http://www.htslib.org/bcftools_release_notes" -SRC_URI="http://sourceforge.net/projects/samtools/files/samtools/1.1/bcftools-1.1.tar.bz2" - -LICENSE="MIT-GRL" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -DEPEND="sci-libs/htslib - dev-lang/perl" -RDEPEND="${DEPEND}" - -src_prepare(){ - sed -e 's#prefix = /usr/local#prefix = /usr#' \ - -e 's@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = -g -Wall -Wc++-compat -O2@' -i Makefile - - sed -e 's#prefix = /usr/local#prefix = /usr#' \ - -e 's@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = -g -Wall -Wc++-compat -O2@' -i htslib-1.1/Makefile -} diff --git a/sci-biology/bcftools/metadata.xml b/sci-biology/bcftools/metadata.xml deleted file mode 100644 index 2bc8930..0000000 --- a/sci-biology/bcftools/metadata.xml +++ /dev/null @@ -1,9 +0,0 @@ - - - - sci-biology - - mmokrejs@fold.natur.cuni.cz - Martin Mokrejs - -