[gentoo-commits] proj/sci:master commit in: sci-biology/MagicViewer/

[gentoo-commits] proj/sci:master commit in: sci-biology/MagicViewer/

[Martin Mokrejs]

commit:     b8a9f4f57b25ab54ae7403885b58664f87cba750
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 18:37:37 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 18:37:37 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b8a9f4f5

sci-biology/MagicViewer: a skeleton for a new package, needs help from java team for sure

---
 sci-biology/MagicViewer/MagicViewer-1.2.1.ebuild | 25 ++++++++++++++++++++++++
 sci-biology/MagicViewer/metadata.xml             |  9 +++++++++
 2 files changed, 34 insertions(+)

diff --git a/sci-biology/MagicViewer/MagicViewer-1.2.1.ebuild b/sci-biology/MagicViewer/MagicViewer-1.2.1.ebuild
new file mode 100644
index 0000000..4342d0f
--- /dev/null
+++ b/sci-biology/MagicViewer/MagicViewer-1.2.1.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+inherit java-pkg-2 java-ant-2 eutils
+
+DESCRIPTION="Display short reads alignment, identify the genetic variation and associate with reference annotation"
+HOMEPAGE="http://bioinformatics.zj.cn/magicviewer"
+SRC_URI="http://59.79.168.90/soft/MagicViewer_1.2.1_x86_64_linux.tar.gz
+		http://59.79.168.90/soft/MagicViewer_1.2.1_x86_32_linux.tar.gz"
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=">=virtual/jdk-1.6"
+RDEPEND="${DEPEND}
+		>=virtual/jre-1.6"
+
+# TODO: install either contents from
+#          MagicViewer_1.2.1_x86_32_linux/ subdir or MagicViewer_1.2.1_x86_64_linux/
+

diff --git a/sci-biology/MagicViewer/metadata.xml b/sci-biology/MagicViewer/metadata.xml
new file mode 100644
index 0000000..07b5255
--- /dev/null
+++ b/sci-biology/MagicViewer/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci-biology</herd>
+	<maintainer>
+		<email>mmokrejs@fold.natur.cuni.cz</email>
+		<name>Martin Mokrejs</name>
+	</maintainer>
+</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-biology/MagicViewer/

[Christoph Junghans]

commit:     016e8d9a1827a1871a10c6fba10149fdc0404745
Author:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 16 03:41:36 2014 +0000
Commit:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Tue Sep 16 03:41:36 2014 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=016e8d9a

added license

Package-Manager: portage-2.2.8-r1

---
 sci-biology/MagicViewer/ChangeLog                | 6 ++++++
 sci-biology/MagicViewer/MagicViewer-1.2.1.ebuild | 9 ++++-----
 2 files changed, 10 insertions(+), 5 deletions(-)

diff --git a/sci-biology/MagicViewer/ChangeLog b/sci-biology/MagicViewer/ChangeLog
new file mode 100644
index 0000000..0983b8b
--- /dev/null
+++ b/sci-biology/MagicViewer/ChangeLog
@@ -0,0 +1,6 @@
+# ChangeLog for sci-biology/MagicViewer
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  16 Sep 2014; Christoph Junghans <ottxor@gentoo.org> MagicViewer-1.2.1.ebuild:
+  added license

diff --git a/sci-biology/MagicViewer/MagicViewer-1.2.1.ebuild b/sci-biology/MagicViewer/MagicViewer-1.2.1.ebuild
index 4342d0f..7284026 100644
--- a/sci-biology/MagicViewer/MagicViewer-1.2.1.ebuild
+++ b/sci-biology/MagicViewer/MagicViewer-1.2.1.ebuild
@@ -1,17 +1,17 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2014 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
-EAPI=3
+EAPI=5
 
 inherit java-pkg-2 java-ant-2 eutils
 
-DESCRIPTION="Display short reads alignment, identify the genetic variation and associate with reference annotation"
+DESCRIPTION="Display short reads alignment, identify the genetic variation + associate with reference annotation"
 HOMEPAGE="http://bioinformatics.zj.cn/magicviewer"
 SRC_URI="http://59.79.168.90/soft/MagicViewer_1.2.1_x86_64_linux.tar.gz
 		http://59.79.168.90/soft/MagicViewer_1.2.1_x86_32_linux.tar.gz"
 
-LICENSE=""
+LICENSE="GRL"
 SLOT="0"
 KEYWORDS=""
 IUSE=""
@@ -22,4 +22,3 @@ RDEPEND="${DEPEND}
 
 # TODO: install either contents from
 #          MagicViewer_1.2.1_x86_32_linux/ subdir or MagicViewer_1.2.1_x86_64_linux/
-

[gentoo-commits] proj/sci:master commit in: sci-biology/MagicViewer/

[Justin Lecher]

commit:     a413663265c4bf249275b355de43113310cbdcb5
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Jan 29 20:20:00 2017 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Jan 29 20:25:16 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=a4136632

sci-biology/MagicViewer: QA fixes

Bump to EAPI 6
shorten DESCRIPTION

Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-biology/MagicViewer/MagicViewer-1.2.1.ebuild | 8 ++++----
 sci-biology/MagicViewer/metadata.xml             | 2 +-
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/sci-biology/MagicViewer/MagicViewer-1.2.1.ebuild b/sci-biology/MagicViewer/MagicViewer-1.2.1.ebuild
index 8d566c5..28e9c9f 100644
--- a/sci-biology/MagicViewer/MagicViewer-1.2.1.ebuild
+++ b/sci-biology/MagicViewer/MagicViewer-1.2.1.ebuild
@@ -1,12 +1,12 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI=5
+EAPI=6
 
-inherit java-pkg-2 java-ant-2 eutils
+inherit java-pkg-2 java-ant-2
 
-DESCRIPTION="Display short reads alignment, identify the genetic variation + associate with reference annotation"
+DESCRIPTION="Display short reads alignment"
 HOMEPAGE="http://bioinformatics.zj.cn/magicviewer"
 SRC_URI="
 	http://59.79.168.90/soft/${PN}_${PV}_x86_64_linux.tar.gz

diff --git a/sci-biology/MagicViewer/metadata.xml b/sci-biology/MagicViewer/metadata.xml
index 1699e58..f68a1b6 100644
--- a/sci-biology/MagicViewer/metadata.xml
+++ b/sci-biology/MagicViewer/metadata.xml
@@ -5,7 +5,7 @@
     <email>mmokrejs@fold.natur.cuni.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
-<maintainer type="project">
+  <maintainer type="project">
     <email>sci-biology@gentoo.org</email>
     <name>Gentoo Biology Project</name>
   </maintainer>