From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/scaffold_builder/
Date: Sun, 23 Mar 2014 20:32:45 +0000 (UTC) [thread overview]
Message-ID: <1395606683.e5dded97493ddde7b18b92023fc77bb7822f64ad.mmokrejs@gentoo> (raw)
commit: e5dded97493ddde7b18b92023fc77bb7822f64ad
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 20:31:23 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 20:31:23 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e5dded97
sci-biology/scaffold_builder: new package but with a missing LICENSE
---
sci-biology/scaffold_builder/ChangeLog | 10 +++++++
sci-biology/scaffold_builder/metadata.xml | 9 +++++++
.../scaffold_builder-20130403.ebuild | 31 ++++++++++++++++++++++
3 files changed, 50 insertions(+)
diff --git a/sci-biology/scaffold_builder/ChangeLog b/sci-biology/scaffold_builder/ChangeLog
new file mode 100644
index 0000000..72c9e84
--- /dev/null
+++ b/sci-biology/scaffold_builder/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/scaffold_builder
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*scaffold_builder-20130403 (23 Mar 2014)
+
+ 23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +scaffold_builder-20130403.ebuild, +metadata.xml:
+ new package but with a missing LICENSE
+
diff --git a/sci-biology/scaffold_builder/metadata.xml b/sci-biology/scaffold_builder/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/scaffold_builder/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
diff --git a/sci-biology/scaffold_builder/scaffold_builder-20130403.ebuild b/sci-biology/scaffold_builder/scaffold_builder-20130403.ebuild
new file mode 100644
index 0000000..f32c0cbf
--- /dev/null
+++ b/sci-biology/scaffold_builder/scaffold_builder-20130403.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=4
+
+S="${WORKDIR}"
+
+DESCRIPTION="Combine FASTA contigs from a de novo assembly into scaffolds using a reference assembly"
+HOMEPAGE="http://sourceforge.net/projects/scaffold-b/"
+SRC_URI="http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2.py
+ http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2_help.doc
+ http://downloads.sourceforge.net/project/scaffold-b/Manual_v2.1.pdf"
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+ dev-lang/python"
+
+src_install(){
+ echo "#! /usr/bin/env python" > scaffold_builder_v2.py || die
+ cat "${DISTDIR}"/scaffold_builder_v2.py >> scaffold_builder_v2.py || die
+ dobin scaffold_builder_v2.py
+ dodoc "${DISTDIR}"/scaffold_builder_v2_help.doc
+ cp "${DISTDIR}"/Manual_v2.1.pdf scaffold_builder_v2_Manual.pdf || die
+ dodoc scaffold_builder_v2_Manual.pdf
+}
next reply other threads:[~2014-03-23 20:32 UTC|newest]
Thread overview: 9+ messages / expand[flat|nested] mbox.gz Atom feed top
2014-03-23 20:32 Martin Mokrejs [this message]
-- strict thread matches above, loose matches on Subject: below --
2014-09-16 4:07 [gentoo-commits] proj/sci:master commit in: sci-biology/scaffold_builder/ Christoph Junghans
2015-01-30 12:48 Martin Mokrejs
2015-05-26 21:34 Martin Mokrejs
2015-05-26 21:43 Martin Mokrejs
2015-09-23 10:19 Justin Lecher
2016-03-29 22:36 Martin Mokrejs
2021-01-19 16:35 Andrew Ammerlaan
2021-02-01 4:51 Andrew Ammerlaan
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=1395606683.e5dded97493ddde7b18b92023fc77bb7822f64ad.mmokrejs@gentoo \
--to=mmokrejs@fold.natur.cuni.cz \
--cc=gentoo-commits@lists.gentoo.org \
--cc=gentoo-dev@lists.gentoo.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox