[gentoo-commits] proj/sci:master commit in: sci-biology/miranda/

[gentoo-commits] proj/sci:master commit in: sci-biology/miranda/

[Justin Lecher]

commit:     07490eb9c1b1b7aad088539665a681677af00544
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jan  6 17:32:05 2014 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jan  6 17:32:05 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=07490eb9

sci-biology/miranda: Punt base.eclass

Package-Manager: portage-2.2.8

---
 sci-biology/miranda/ChangeLog           |  6 +++++-
 sci-biology/miranda/metadata.xml        | 10 +++++-----
 sci-biology/miranda/miranda-3.3a.ebuild |  4 ++--
 3 files changed, 12 insertions(+), 8 deletions(-)

diff --git a/sci-biology/miranda/ChangeLog b/sci-biology/miranda/ChangeLog
index b3a0c61..0d36b85 100644
--- a/sci-biology/miranda/ChangeLog
+++ b/sci-biology/miranda/ChangeLog
@@ -1,7 +1,11 @@
 # ChangeLog for sci-biology/miranda
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  06 Jan 2014; Justin Lecher <jlec@gentoo.org> miranda-3.3a.ebuild,
+  metadata.xml:
+  Punt base.eclass
+
 *miranda-3.3a (08 Nov 2010)
 
   08 Nov 2010; Kacper Kowalik <xarthisius@gentoo.org> -miranda-3.0.ebuild,

diff --git a/sci-biology/miranda/metadata.xml b/sci-biology/miranda/metadata.xml
index 3302123..fc7c769 100644
--- a/sci-biology/miranda/metadata.xml
+++ b/sci-biology/miranda/metadata.xml
@@ -1,9 +1,9 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-	<maintainer>
-		<email>weaver@gentoo.org</email>
-		<name>Andrey Kislyuk</name>
-	</maintainer>
-	<herd>sci-biology</herd>
+  <maintainer>
+    <email>weaver@gentoo.org</email>
+    <name>Andrey Kislyuk</name>
+  </maintainer>
+  <herd>sci-biology</herd>
 </pkgmetadata>

diff --git a/sci-biology/miranda/miranda-3.3a.ebuild b/sci-biology/miranda/miranda-3.3a.ebuild
index 77e0dc9..caf5265 100644
--- a/sci-biology/miranda/miranda-3.3a.ebuild
+++ b/sci-biology/miranda/miranda-3.3a.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2014 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/amos-2.0.8.ebuild,v 1.1 2008/08/26 16:33:07 weaver Exp $
 
-inherit base
+EAPI=5
 
 MY_PN=miRanda
 MY_P=${MY_PN}-${PV}

[gentoo-commits] proj/sci:master commit in: sci-biology/miranda/

[Jakov Smolić]

commit:     db54d87b772d63b32065d310116ca6396bbc2b2b
Author:     Jakov Smolic <jakov.smolic <AT> sartura <DOT> hr>
AuthorDate: Sat Feb 20 21:10:43 2021 +0000
Commit:     Jakov Smolić <jakov.smolic <AT> sartura <DOT> hr>
CommitDate: Sat Feb 20 21:57:41 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=db54d87b

sci-biology/miranda: Port to EAPI 7

Closes: https://bugs.gentoo.org/755566
Signed-off-by: Jakov Smolic <jakov.smolic <AT> sartura.hr>

 sci-biology/miranda/miranda-3.3a.ebuild | 14 +++++++++-----
 1 file changed, 9 insertions(+), 5 deletions(-)

diff --git a/sci-biology/miranda/miranda-3.3a.ebuild b/sci-biology/miranda/miranda-3.3a.ebuild
index 1bf1c058c..dac4f38be 100644
--- a/sci-biology/miranda/miranda-3.3a.ebuild
+++ b/sci-biology/miranda/miranda-3.3a.ebuild
@@ -1,7 +1,9 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
+
+inherit flag-o-matic
 
 MY_PN=miRanda
 MY_P=${MY_PN}-${PV}
@@ -12,9 +14,11 @@ SRC_URI="http://cbio.mskcc.org/microrna_data/${MY_PN}-aug2010.tar.gz"
 
 LICENSE="GPL-2"
 SLOT="0"
-IUSE=""
 KEYWORDS="~amd64 ~x86"
 
-S=${WORKDIR}/${MY_P}
+S="${WORKDIR}/${MY_P}"
 
-DOCS=( AUTHORS ChangeLog NEWS README THANKS )
+src_configure() {
+	append-cflags -fcommon
+	default
+}

[gentoo-commits] proj/sci:master commit in: sci-biology/miranda/

[Andrew Ammerlaan]

commit:     0251468f9e06c9a71ebe753425b9903112a45868
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Thu Feb 25 14:42:13 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Thu Feb 25 14:42:13 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=0251468f

sci-biology/miranda: update homepage: connect timeout

Package-Manager: Portage-3.0.15, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/miranda/miranda-3.3a.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/miranda/miranda-3.3a.ebuild b/sci-biology/miranda/miranda-3.3a.ebuild
index dac4f38be..941aeeec3 100644
--- a/sci-biology/miranda/miranda-3.3a.ebuild
+++ b/sci-biology/miranda/miranda-3.3a.ebuild
@@ -9,7 +9,7 @@ MY_PN=miRanda
 MY_P=${MY_PN}-${PV}
 
 DESCRIPTION="An algorithm for finding genomic targets for microRNAs"
-HOMEPAGE="http://www.microrna.org/"
+HOMEPAGE="https://www.mskcc.org/research/ski/programs/computational-biology"
 SRC_URI="http://cbio.mskcc.org/microrna_data/${MY_PN}-aug2010.tar.gz"
 
 LICENSE="GPL-2"