From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 074051381F3 for ; Fri, 27 Sep 2013 15:05:09 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id DB0EBE0EB8; Fri, 27 Sep 2013 15:05:04 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 66D12E0EB8 for ; Fri, 27 Sep 2013 15:05:04 +0000 (UTC) Received: from hornbill.gentoo.org (hornbill.gentoo.org [94.100.119.163]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 4AE2E33EE44 for ; Fri, 27 Sep 2013 15:05:03 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by hornbill.gentoo.org (Postfix) with ESMTP id 0320CE5460 for ; Fri, 27 Sep 2013 15:05:02 +0000 (UTC) From: "Nicolas Bock" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Nicolas Bock" Message-ID: <1380224123.9ee84fa74a5bc48850d98dd49edbe223e8085e5a.nicolasbock@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/bowtie/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/bowtie/bowtie-2.1.0.ebuild X-VCS-Directories: sci-biology/bowtie/ X-VCS-Committer: nicolasbock X-VCS-Committer-Name: Nicolas Bock X-VCS-Revision: 9ee84fa74a5bc48850d98dd49edbe223e8085e5a X-VCS-Branch: master Date: Fri, 27 Sep 2013 15:05:02 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 852d4f52-c2c3-4ed0-af1c-b63f91ede96c X-Archives-Hash: 28f9c2443836a888ebdac8c181df6253 commit: 9ee84fa74a5bc48850d98dd49edbe223e8085e5a Author: cel gmail com> AuthorDate: Thu Sep 26 19:35:23 2013 +0000 Commit: Nicolas Bock gmail com> CommitDate: Thu Sep 26 19:35:23 2013 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9ee84fa7 sci-biology/bowtie: fixed check for sse2 support. --- sci-biology/bowtie/bowtie-2.1.0.ebuild | 21 ++++++++------------- 1 file changed, 8 insertions(+), 13 deletions(-) diff --git a/sci-biology/bowtie/bowtie-2.1.0.ebuild b/sci-biology/bowtie/bowtie-2.1.0.ebuild index c2c5024..26bf770 100644 --- a/sci-biology/bowtie/bowtie-2.1.0.ebuild +++ b/sci-biology/bowtie/bowtie-2.1.0.ebuild @@ -4,7 +4,7 @@ EAPI=5 -inherit eutils flag-o-matic toolchain-funcs +inherit eutils toolchain-funcs DESCRIPTION="An ultrafast memory-efficient short read aligner" HOMEPAGE="http://bowtie-bio.sourceforge.net/" @@ -12,23 +12,19 @@ SRC_URI="mirror://sourceforge/bowtie-bio/${P}-source.zip" LICENSE="GPL-3" SLOT="2" -IUSE="sse2 examples" +IUSE="examples" KEYWORDS="~amd64 ~x86" -CDEPEND="dev-lang/perl" -DEPEND="${CDEPEND} \ +RDEPEND="dev-lang/perl" +DEPEND="${RDEPEND} app-arch/unzip" -RDEPEND="${CDEPEND}" S="${WORKDIR}/${PN}2-${PV}" pkg_pretend() { - if ! use sse2 ; then - ebegin - eerror "bowtie2 requires sse2 support. Please make sure your system supports" - eerror "sse2 and enable the sse2 use flag." - eend - die + grep "sse2" /proc/cpuinfo > /dev/null + if [[ $? -ne 0 ]] ; then + ewarn "Your processor does not support sse2. Bowtie will probably not work on this machine." fi } @@ -37,12 +33,11 @@ src_prepare() { } src_compile() { - use sse2 && append-cxxflags -msse2 emake \ CC="$(tc-getCC)" \ CPP="$(tc-getCXX)" \ EXTRA_FLAGS="${LDFLAGS}" \ - RELEASE_FLAGS="${CXXFLAGS}" + RELEASE_FLAGS="${CXXFLAGS} -msse2" } src_install() {