[gentoo-commits] proj/sci:master commit in: sci-physics/lammps/

["Christoph Junghans" <ottxor@gentoo.org>]

commit:     a6750bd491d834f5e066b606da0200411053ab99
Author:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Wed Jun 26 23:53:01 2013 +0000
Commit:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Wed Jun 26 23:53:01 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a6750bd4

moved to gx86

---
 sci-physics/lammps/ChangeLog              |  65 ------------------
 sci-physics/lammps/lammps-20130512.ebuild |  72 --------------------
 sci-physics/lammps/lammps-20130514.ebuild |  75 ---------------------
 sci-physics/lammps/lammps-20130526.ebuild | 105 ------------------------------
 sci-physics/lammps/metadata.xml           |  30 ---------
 5 files changed, 347 deletions(-)

diff --git a/sci-physics/lammps/ChangeLog b/sci-physics/lammps/ChangeLog
deleted file mode 100644
index ac52ff6..0000000
--- a/sci-physics/lammps/ChangeLog
+++ /dev/null
@@ -1,65 +0,0 @@
-# ChangeLog for sci-physics/lammps
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-  26 Jun 2013; Nicolas Bock <nicolasbock@gmail.com> lammps-20130526.ebuild:
-  Bashified package name mangling.  Thanks to ottxor for suggesting and helpful
-  discussions.
-
-  26 Jun 2013; Nicolas Bock <nicolasbock@gmail.com> lammps-20130526.ebuild:
-  Fixed missing use flag.
-
-  26 Jun 2013; Christoph Junghans <ottxor@gentoo.org> lammps-20130526.ebuild:
-  clean up
-
-  28 May 2013; Nicolas Bock <nicolasbock@gmail.com> lammps-20130526.ebuild:
-  Moved html documentation one folder up.
-
-*lammps-20130526 (28 May 2013)
-
-  28 May 2013; Nicolas Bock <nicolasbock@gmail.com> +lammps-20130526.ebuild:
-  Version bump.
-
-  28 May 2013; Nicolas Bock <nicolasbock@gmail.com> lammps-20130514.ebuild:
-  Added html documentation.
-
-  16 May 2013; Nicolas Bock <nicolasbock@gmail.com> lammps-20130514.ebuild:
-  Fixed spelling in doc install.
-
-*lammps-20130514 (16 May 2013)
-
-  16 May 2013; Nicolas Bock <nicolasbock@gmail.com> +lammps-20130514.ebuild:
-  Version bump to 14 May 2013.
-
-  15 May 2013; Nicolas Bock <nicolasbock@gmail.com> lammps-20130512.ebuild
-  -files/Makefile.gentoo-serial.patch:
-  Added mpi use flag.  This ebuild builds either the serial version (without the
-  mpi use flag), or the parallel version.
-
-  10 May 2013; Nicolas Bock <nicolasbock@gmail.com> lammps-20130512.ebuild:
-  Moved a variable definition.
-
-  10 May 2013; Nicolas Bock <nicolasbock@gmail.com> lammps-20130512.ebuild,
-  metadata.xml:
-  Added more use flags to control the build process.  It seems, at least on my
-  system, that the LAMMPS_MEMALIGN option is a guarantee for a segfault. I made
-  the use of this macro optional.
-
-  10 May 2013; Nicolas Bock <nicolasbock@gmail.com> lammps-20130512.ebuild:
-  Cleaned up the make command line arguments.
-
-  10 May 2013; Nicolas Bock <nicolasbock@gmail.com> lammps-20130512.ebuild:
-  The meam package doesn't like to be built in parallel.
-
-  10 May 2013; Nicolas Bock <nicolasbock@gmail.com> lammps-20130512.ebuild,
-  metadata.xml:
-  lammps: Added use flags for some optional packages.
-
-  10 May 2013; Nicolas Bock <nicolasbock@gmail.com> metadata.xml:
-  Added maintainer (myself) to metadata.xml for lammps.
-
-*lammps-20130512 (10 May 2013)
-
-  10 May 2013; Nicolas Bock <nicolasbock@gmail.com>
-  +files/Makefile.gentoo-serial.patch, +lammps-20130512.ebuild, +metadata.xml:
-  Added first draft version of lammps.  For now this is only the serial version.

diff --git a/sci-physics/lammps/lammps-20130512.ebuild b/sci-physics/lammps/lammps-20130512.ebuild
deleted file mode 100644
index dcb882e..0000000
--- a/sci-physics/lammps/lammps-20130512.ebuild
+++ /dev/null
@@ -1,72 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=5
-
-FORTRAN_NEEDED="package-meam"
-
-inherit eutils fortran-2
-
-LAMMPSDATE="12May13"
-
-DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator"
-HOMEPAGE="http://lammps.sandia.gov/"
-SRC_URI="http://lammps.sandia.gov/tars/lammps-${LAMMPSDATE}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="doc examples gzip lammps-memalign mpi package-dipole package-meam package-rigid"
-
-DEPEND="mpi? ( virtual/mpi )"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${PN}-${LAMMPSDATE}"
-
-lmp_emake() {
-	local LAMMPS_INCLUDEFLAGS=
-	use gzip && LAMMPS_INCLUDEFLAGS+=" -DLAMMPS_GZIP"
-	use lammps-memalign && LAMMPS_INCLUDEFLAGS+=" -DLAMMPS_MEMALIGN"
-
-	# Note: The lammps makefile uses CC to indicate the C++ compiler.
-	emake \
-		ARCHIVE=$(tc-getAR) \
-		CC=$(use mpi && echo mpic++ || echo $(tc-getCXX)) \
-		F90=$(use mpi && echo mpif90 || echo $(tc-getFC)) \
-		LINK=$(use mpi && echo mpic++ || echo $(tc-getCXX)) \
-		CCFLAGS="${CXXFLAGS}" \
-		F90FLAGS="${FCFLAGS}" \
-		LINKFLAGS="${LDFLAGS}" \
-		LMP_INC="${LAMMPS_INCLUDEFLAGS}" \
-		MPI_INC=$(use mpi || echo -I../STUBS) \
-		MPI_PATH=$(use mpi || echo -L../STUBS) \
-		MPI_LIB=$(use mpi || echo -lmpi_stubs) \
- 		"$@"
-}
-
-src_compile() {
-	# Compile stubs for serial version.
-	use mpi || lmp_emake -C src stubs
-
-	# Build optional packages.
-	if use package-meam; then
-		lmp_emake -C src yes-meam
-		lmp_emake -j1 -C lib/meam -f Makefile.gfortran
-	fi
-	use package-dipole && emake -C src yes-dipole
-	use package-rigid && emake -C src yes-rigid
-
-	# Compile.
-	lmp_emake -C src serial
-}
-
-src_install() {
-	newbin "$S/src/lmp_serial" "lmp"
-	if use examples; then
-		insinto "/usr/share/doc/${PF}"
-		doins -r examples
-	fi
-	dodoc README
-	use doc && dohtml -r docs/*.html
-}

diff --git a/sci-physics/lammps/lammps-20130514.ebuild b/sci-physics/lammps/lammps-20130514.ebuild
deleted file mode 100644
index 61c2e12..0000000
--- a/sci-physics/lammps/lammps-20130514.ebuild
+++ /dev/null
@@ -1,75 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=5
-
-FORTRAN_NEEDED="package-meam"
-
-inherit eutils fortran-2
-
-LAMMPSDATE="14May13"
-
-DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator"
-HOMEPAGE="http://lammps.sandia.gov/"
-SRC_URI="http://lammps.sandia.gov/tars/lammps-${LAMMPSDATE}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="doc examples gzip lammps-memalign mpi package-dipole package-meam package-rigid"
-
-DEPEND="mpi? ( virtual/mpi )"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${PN}-${LAMMPSDATE}"
-
-lmp_emake() {
-	local LAMMPS_INCLUDEFLAGS=
-	use gzip && LAMMPS_INCLUDEFLAGS+=" -DLAMMPS_GZIP"
-	use lammps-memalign && LAMMPS_INCLUDEFLAGS+=" -DLAMMPS_MEMALIGN"
-
-	# Note: The lammps makefile uses CC to indicate the C++ compiler.
-	emake \
-		ARCHIVE=$(tc-getAR) \
-		CC=$(use mpi && echo mpic++ || echo $(tc-getCXX)) \
-		F90=$(use mpi && echo mpif90 || echo $(tc-getFC)) \
-		LINK=$(use mpi && echo mpic++ || echo $(tc-getCXX)) \
-		CCFLAGS="${CXXFLAGS}" \
-		F90FLAGS="${FCFLAGS}" \
-		LINKFLAGS="${LDFLAGS}" \
-		LMP_INC="${LAMMPS_INCLUDEFLAGS}" \
-		MPI_INC=$(use mpi || echo -I../STUBS) \
-		MPI_PATH=$(use mpi || echo -L../STUBS) \
-		MPI_LIB=$(use mpi || echo -lmpi_stubs) \
- 		"$@"
-}
-
-src_compile() {
-	# Compile stubs for serial version.
-	use mpi || lmp_emake -C src stubs
-
-	# Build optional packages.
-	if use package-meam; then
-		lmp_emake -C src yes-meam
-		lmp_emake -j1 -C lib/meam -f Makefile.gfortran
-	fi
-	use package-dipole && emake -C src yes-dipole
-	use package-rigid && emake -C src yes-rigid
-
-	# Compile.
-	lmp_emake -C src serial
-}
-
-src_install() {
-	newbin "src/lmp_serial" "lmp"
-	if use examples; then
-		insinto "/usr/share/doc/${PF}"
-		doins -r examples
-	fi
-	dodoc README
-	if use doc; then
-		dodoc doc/Manual.pdf
-		dohtml -r doc
-	fi
-}

diff --git a/sci-physics/lammps/lammps-20130526.ebuild b/sci-physics/lammps/lammps-20130526.ebuild
deleted file mode 100644
index cfc247b..0000000
--- a/sci-physics/lammps/lammps-20130526.ebuild
+++ /dev/null
@@ -1,105 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=5
-
-FORTRAN_NEEDED="package-meam"
-
-inherit eutils fortran-2
-
-convert_month() {
-	case $1 in
-		01) echo Jan
-			;;
-		02) echo Feb
-			;;
-		03) echo Mar
-			;;
-		04) echo Apr
-			;;
-		05) echo May
-			;;
-		06) echo Jun
-			;;
-		07) echo Jul
-			;;
-		08) echo Aug
-			;;
-		09) echo Sep
-			;;
-		10) echo Oct
-			;;
-		11) echo Nov
-			;;
-		12) echo Dec
-			;;
-		*)  echo unknown
-			;;
-	esac
-}
-
-MY_P=${PN}-$((${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2}
-
-DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator"
-HOMEPAGE="http://lammps.sandia.gov/"
-SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="doc examples gzip lammps-memalign mpi package-dipole package-meam package-rigid"
-
-DEPEND="mpi? ( virtual/mpi )"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${MY_P}"
-
-lmp_emake() {
-	local LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')"
-	LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN' '')"
-
-	# Note: The lammps makefile uses CC to indicate the C++ compiler.
-	emake \
-		ARCHIVE=$(tc-getAR) \
-		CC=$(usex mpi "mpic++" "$(tc-getCXX)") \
-		F90=$(usex mpi "mpif90" "$(tc-getFC)") \
-		LINK=$(usex mpi "mpic++" "$(tc-getCXX)") \
-		CCFLAGS="${CXXFLAGS}" \
-		F90FLAGS="${FCFLAGS}" \
-		LINKFLAGS="${LDFLAGS}" \
-		LMP_INC="${LAMMPS_INCLUDEFLAGS}" \
-		MPI_INC=$(usex mpi '' "-I../STUBS") \
-		MPI_PATH=$(usex mpi '' '-L../STUBS') \
-		MPI_LIB=$(usex mpi '' '-lmpi_stubs') \
- 		"$@"
-}
-
-src_compile() {
-	# Compile stubs for serial version.
-	use mpi || lmp_emake -C src stubs
-
-	# Build optional packages.
-	if use package-meam; then
-		lmp_emake -C src yes-meam
-		lmp_emake -j1 -C lib/meam -f Makefile.gfortran
-	fi
-	use package-dipole && emake -C src yes-dipole
-	use package-rigid && emake -C src yes-rigid
-
-	# Compile.
-	lmp_emake -C src serial
-}
-
-src_install() {
-	newbin "src/lmp_serial" "lmp"
-	if use examples; then
-		insinto "/usr/share/doc/${PF}"
-		doins -r examples
-	fi
-	dodoc README
-	if use doc; then
-		dodoc doc/Manual.pdf
-		dohtml -r doc/*
-	fi
-}

diff --git a/sci-physics/lammps/metadata.xml b/sci-physics/lammps/metadata.xml
deleted file mode 100644
index b5e2ddd..0000000
--- a/sci-physics/lammps/metadata.xml
+++ /dev/null
@@ -1,30 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<longdescription lang="en">
-		LAMMPS is a classical molecular dynamics code, and an acronym for
-		Large-scale Atomic/Molecular Massively Parallel Simulator.
-
-		LAMMPS has potentials for soft materials (biomolecules, polymers) and
-		solid-state materials (metals, semiconductors) and coarse-grained or
-		mesoscopic systems. It can be used to model atoms or, more generically,
-		as a parallel particle simulator at the atomic, meso, or continuum
-		scale.
-
-		LAMMPS runs on single processors or in parallel using message-passing
-		techniques and a spatial-decomposition of the simulation domain. The
-		code is designed to be easy to modify or extend with new functionality. 
-	</longdescription>
-	<use>
-		<flag name="lammps-memalign">Enables the use of the posix_memalign()
-			call instead of malloc() when large chunks or memory are allocated
-			by LAMMPS</flag>
-		<flag name="package-meam">modified EAM potential</flag>
-		<flag name="package-dipole">point dipole particles</flag>
-		<flag name="package-rigid">rigid bodies</flag>
-	</use>
-	<maintainer>
-		<email>nicolasbock@gmail.com</email>
-	</maintainer>
-</pkgmetadata>
-