From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 616BC1381F3 for ; Tue, 4 Jun 2013 11:59:46 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id C5AABE0954; Tue, 4 Jun 2013 11:59:45 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 206E2E0942 for ; Tue, 4 Jun 2013 11:59:45 +0000 (UTC) Received: from hornbill.gentoo.org (hornbill.gentoo.org [94.100.119.163]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 347E533DF72 for ; Tue, 4 Jun 2013 11:59:44 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by hornbill.gentoo.org (Postfix) with ESMTP id CF836E5461 for ; Tue, 4 Jun 2013 11:59:42 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1370341013.4a0cd7b7880db8bceb9a2c757d2dbce678822e6a.jlec@gentoo> Subject: [gentoo-commits] proj/sci:ccp4 commit in: / X-VCS-Repository: proj/sci X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: 4a0cd7b7880db8bceb9a2c757d2dbce678822e6a X-VCS-Branch: ccp4 Date: Tue, 4 Jun 2013 11:59:42 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: fdf461d9-934d-4ad0-81fc-b9eaed98c917 X-Archives-Hash: dd6419166015940e47548180b65c8136 commit: 4a0cd7b7880db8bceb9a2c757d2dbce678822e6a Author: Justin Lecher gentoo org> AuthorDate: Tue Jun 4 10:16:53 2013 +0000 Commit: Justin Lecher gentoo org> CommitDate: Tue Jun 4 10:16:53 2013 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=4a0cd7b7 Merge branch 'master' into ccp4 * master: added ~amd64-linux + clean up update minimal versions of some dependencies for scilab replacing patch with epatch using versioned patch for sys-cluster/modules, too now using versioned patches Fixed SRC_URI. implemented clean fix for changed errorline API in TCL relaced custom CURL with stock version minor fixes to comply with Gentoo coding style initial commit sync with gx86 sci-chemistry/coot: Update pc patches sci-chemistry/coot: Fix PYTHON() -> ${EPYTHON} for new eclasses added fix for recent glibc with PGI added PGI ebuild added updated Manifest fixed compilation of modules with recent tcl Signed-off-by: Justin Lecher gentoo.org> Conflicts: sci-chemistry/coot/ChangeLog sci-chemistry/coot/coot-9999.ebuild dev-java/jcip-annotations/ChangeLog | 3 + .../jcip-annotations-1.0-r1.ebuild | 2 +- dev-lang/pgi/Manifest | 1 + dev-lang/pgi/files/pgi-13.5-glibc.patch | 31 + dev-lang/pgi/files/pgi-13.5-terminal.patch | 39 + {dev-util/amdapp => dev-lang/pgi}/metadata.xml | 7 +- dev-lang/pgi/pgi-13.5.ebuild | 115 +++ licenses/PGI | 262 +++++ sci-chemistry/coot/ChangeLog | 5 + sci-chemistry/coot/Manifest | 2 +- sci-chemistry/coot/coot-9999.ebuild | 20 +- sci-chemistry/coot/files/9999-clipper-config.patch | 17 - sci-chemistry/coot/files/9999-goocanvas.patch | 25 - sci-chemistry/coot/files/9999-mmdb-config.patch | 18 - sci-chemistry/coot/files/9999-pc.patch | 1040 ++++++++++++++++++++ sci-chemistry/coot/files/9999-ssm.patch | 56 -- sci-chemistry/gromacs/ChangeLog | 3 + sci-chemistry/gromacs/gromacs-4.6.9999.ebuild | 7 +- sci-chemistry/mdsctk/ChangeLog | 13 + sci-chemistry/mdsctk/Manifest | 1 + sci-chemistry/mdsctk/mdsctk-1.0.0.ebuild | 51 + .../mdsctk}/metadata.xml | 3 + sci-mathematics/scilab/scilab-5.4.1.ebuild | 6 +- sys-cluster/modules/Manifest | 2 +- .../modules/files/modules-3.2.9c-errorline.patch | 15 + sys-cluster/modules/modules-3.2.9c-r1.ebuild | 6 +- 26 files changed, 1609 insertions(+), 141 deletions(-)