From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id E49EE138010 for ; Fri, 31 Aug 2012 07:42:54 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 00B43E0477; Fri, 31 Aug 2012 07:42:37 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) by pigeon.gentoo.org (Postfix) with ESMTP id 94C50E0477 for ; Fri, 31 Aug 2012 07:42:37 +0000 (UTC) Received: from hornbill.gentoo.org (hornbill.gentoo.org [94.100.119.163]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 7D30A33D8C7 for ; Fri, 31 Aug 2012 07:42:36 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by hornbill.gentoo.org (Postfix) with ESMTP id 30CADE543C for ; Fri, 31 Aug 2012 07:42:35 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1346398925.b509b68963ee95b18c81b76dc4ee102b1174365d.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: profiles/ X-VCS-Repository: proj/sci X-VCS-Files: profiles/use.local.desc X-VCS-Directories: profiles/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: b509b68963ee95b18c81b76dc4ee102b1174365d X-VCS-Branch: master Date: Fri, 31 Aug 2012 07:42:35 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 2fda2767-4f4f-4fb2-a823-fc59c7d01683 X-Archives-Hash: 8c1c9fba4bca123ad34f7d21cbb9490d commit: b509b68963ee95b18c81b76dc4ee102b1174365d Author: Justin Lecher gentoo org> AuthorDate: Fri Aug 31 07:42:05 2012 +0000 Commit: Justin Lecher gentoo org> CommitDate: Fri Aug 31 07:42:05 2012 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b509b689 update descriptions --- profiles/use.local.desc | 120 +++++++++++++++++++++++++++++++++++------------ 1 files changed, 89 insertions(+), 31 deletions(-) diff --git a/profiles/use.local.desc b/profiles/use.local.desc index 597e7df..3193225 100644 --- a/profiles/use.local.desc +++ b/profiles/use.local.desc @@ -2,25 +2,48 @@ # your descriptions to your package's metadata.xml ONLY. # * generated automatically using egencache * +dev-cpp/eigen:adolc - Enable use for automatic differentiation using sci-libs/adolc +dev-cpp/eigen:sparse - Enable use for extra sparse matrix with sci-libs/umfpack, sci-libs/cholmod, sci-libs/superlu and dev-cpp/sparsehash dev-java/hdf-java:hdf - Add support for the Hierarchical Data Format v.4 (sci-libs/hdf) +dev-java/hdf-java:hdfview - Build a GUI viewer for all files supported in dev-java/hdf-java +dev-java/jogl:cg - Enable NVidia Cg binding. dev-lang/icc:eclipse - Install the dev-util/eclipse-sdk plugins dev-lang/idb:eclipse - Install the dev-util/eclipse-sdk plugins -dev-lang/path64:debugger - Build PathDB +dev-lang/path64:assembler - Build PathAS assembler +dev-lang/path64:debugger - Build PathDB debugger dev-lang/path64:native - Use EKOPath/Path64 for bootstraping +dev-lang/path64:valgrind - Support compiler debugging with dev-util/valgrind dev-libs/intel-common:compiler - Install the libraries needed for the icc and ifort compilers dev-ml/mlgmpidl:mpfr - add support for mpfr, the library for multiple-precision floating-point computations with exact rounding -dev-python/cvxopt:glpk - Use GNU Linear Programming Kit +dev-ml/zarith:mpir - Use mpir library instead of gmp dev-python/ffnet:matplotlib - Use matplotlib for drawing +dev-python/pyhdf:szip - Allow to use sci-libs/szip for SZIP compression method in SDsetcompress() +dev-util/nvidia-cuda-sdk:cuda - Build CUDA binaries +dev-util/nvidia-cuda-sdk:opencl - Build OpenCL binaries +dev-util/nvidia-cuda-toolkit:debugger - Installs the NVIDIA CUDA debugger +dev-util/nvidia-cuda-toolkit:profiler - Installs the NVIDIA CUDA visual profiler media-gfx/brlcad:benchmarks - Run benchmarks during test phase (need test option enabled) +net-fs/cvmfs:client - Install the cvmfs client programs and init script +net-fs/cvmfs:server - Install the cvmfsd program and init script net-misc/dhcp:client - Install the dhclient program -net-misc/dhcp:infiniband - Enable ipoib support net-misc/dhcp:server - Install the dhcpd and dhcrelay programs sci-astronomy/psfex:plplot - Build with sci-libs/plplot to allow diagnostic plots during processing -sci-biology/estscan:intel - Use intel compiler +sci-astronomy/scamp:plplot - Build with sci-libs/plplot to allow diagnostic plots during processing +sci-astronomy/sextractor:modelfit - Enable profile model fitting, needs sci-libs/atlas and sci-libs/fftw +sci-astronomy/zpeg:gdl - Install GDL/IDL plotting routines sci-chemistry/avogadro:glsl - Enable glsl features via GLEW. +sci-chemistry/ball:cuda - Include cuda support +sci-chemistry/ball:sql - Include SQL database support +sci-chemistry/ball:webkit - Uses x11-libs/qt-webkit for drawing +sci-chemistry/gromacs:avx128fma - Enable 128bit avx with fma (e.g. AMD BullDozer) +sci-chemistry/gromacs:avx256 - Enable 256bit avx (e.g. Intel Sandy Bridge) +sci-chemistry/gromacs:cuda - Enable cuda non-bonded kernels sci-chemistry/gromacs:double-precision - More precise calculations at the expense of speed sci-chemistry/gromacs:fkernels - Enable building of Fortran Kernels for platforms that dont have assembly loops +sci-chemistry/gromacs:hybrid - Enable hybrid acceleration kernels +sci-chemistry/gromacs:power6 - Enable Power6 optimizations sci-chemistry/gromacs:single-precision - Single precision version of gromacs (default) +sci-chemistry/gromacs:sse41 - Enable sse4.1 acceleration sci-chemistry/jmol:client-only - Install the viewer only, no applet files for httpd sci-chemistry/pymol:apbs - Pymol supprt for sci-chemistry/apbs sci-chemistry/pymol:numpy - Enable numpy support for Pymol @@ -28,8 +51,7 @@ sci-chemistry/pymol:vmd - Builds molfile plugin support sci-chemistry/pymol:web - Install Pymodule needed for web app support sci-chemistry/rosetta:boinc - compile rosetta as a rosetta@home client sci-chemistry/rosetta:boost - compile rosetta with boost supported code -sci-chemistry/votca-csg:boost - Compile against external boost headers from dev-libs/boost -sci-chemistry/votca-csg:extras - Pull in extra applications from dev-libs/boost +sci-chemistry/votca-csg:extras - Pull in extra applications from sci-chemistry/votca-csg-apps sci-chemistry/votca-csg:gromacs - Add support for gromacs file formats through sci-chemistry/gromacs sci-electronics/player:boost - Automatically generated description for boost sci-electronics/player:festival - Automatically generated description for festival @@ -38,15 +60,30 @@ sci-electronics/player:sphinx2 - Automatically generated description for sphinx2 sci-geosciences/libtcd:non-commercial - Allows the use of a tide constituent database that is available for non-commercial use only. sci-geosciences/qgis:grass - Add support for sci-geosciences/grass sci-geosciences/xtide:non-commercial - Allows the use of a tide constituent database that is available for non-commercial use only. -sci-libs/atlas:xblas - Build LAPACK with extra precision (needs sci-libs/xblas) +sci-libs/acml:gfortran - Fetch and install acml compiled with GNU FORTRAN compiler +sci-libs/acml:ifort - Fetch and install acml compiled with the Intel FORTRAN compiler +sci-libs/acml:int64 - Install the 64 bits integer library +sci-libs/acml:nag - Fetch and install acml compiled with the NAG FORTRAN compiler +sci-libs/acml:open64 - Fetch and install acml compiled with the Open64 FORTRAN Compiler +sci-libs/acml:pgi - Fetch and install acml compiled with the Portland Group FORTRAN compiler +sci-libs/armadillo:atlas - Link with ATLAS libraries for cblas and clapack (needs sci-libs/lapack-atlas) +sci-libs/atlas:generic - Build atlas assuming a fairly generic architecture (sse2 for x86, core2 for amd64) sci-libs/bigdft:cuda - Add cuda support sci-libs/calculix-ccx:arpack - Add sparse eigen value support via sci-libs/arpack +sci-libs/coinor-clp:glpk - Enable GNU Linear Programming Kit sci-mathematics/glpk support +sci-libs/coinor-clp:metis - Enable partitioning with sci-libs/metis +sci-libs/coinor-clp:mumps - Enable sci-libs/mumps support +sci-libs/coinor-clp:sparse - Enable support for sparse matrix with sci-libs/cholmod +sci-libs/coinor-osi:glpk - Enable GNU Linear Programming Kit sci-mathematics/glpk support +sci-libs/coinor-symphony:glpk - Enable GNU Linear Programming Kit sci-mathematics/glpk support +sci-libs/coinor-utils:glpk - Enable GNU Linear Programming Kit sci-mathematics/glpk support sci-libs/factory:singular - Enable support for sci-mathematics/singular -sci-libs/fox:dom - Automatically generated description for dom -sci-libs/fox:fast - Automatically generated description for fast -sci-libs/fox:sax - Automatically generated description for sax -sci-libs/fox:wcml - Automatically generated description for wcml -sci-libs/fox:wxml - Automatically generated description for wxml +sci-libs/fox:dom - Compile the W3C document object model module +sci-libs/fox:fast - Compile with best known optimization flags +sci-libs/fox:sax - Compile the streaming, validating parser based on java's Simple API for XML +sci-libs/fox:wcml - Compile the module for a subset of the Chemical Markup Language +sci-libs/fox:wkml - Compile the module for the creation of KML documents used by applications such as Google Earth +sci-libs/fox:wxml - Compile the XML writer used to sequentially create arbitrary XML documents quickly with minimal memory requirements sci-libs/gmsh:cgns - Enables cgns output support sci-libs/gmsh:chaco - Enables chaco partitioner support sci-libs/gmsh:med - Enables med support @@ -56,19 +93,27 @@ sci-libs/gmsh:opencascade - Enable OpenCASCADE support sci-libs/gmsh:petsc - Enable sci-mathematics/petsc support sci-libs/gmsh:taucs - Enable sci-libs/taucs support sci-libs/gmsh:tetgen - Enable 3D delauny triangulation using tetgen lib -sci-libs/libcmatrix:atlas - Use of atlas blas implementation +sci-libs/gotoblas2:dynamic - Build dynamic architecture detection at run time (for multi targets) +sci-libs/gotoblas2:incblas - Build the CBLAS interface +sci-libs/gotoblas2:int64 - Build the 64 bits integer library +sci-libs/ipopt:mumps - Enable sci-libs/mumps support +sci-libs/lapack-reference:xblas - Build LAPACK with extra precision (needs sci-libs/xblas) +sci-libs/lapacke-reference:xblas - Build LAPACKE with extra precision (needs sci-libs/xblas) +sci-libs/levmar:plasma - Use the multi-threaded sci-libs/plasma library for linear algebra sci-libs/libfac:singular - Automatically generated description for singular sci-libs/lwpr:octave - Add sci-mathematics/octave support +sci-libs/magma:fermi - Compile for GPU NVIDIA Fermi family (2.x cards) +sci-libs/magma:tesla - Compile for GPU NVIDIA Tesla family (1.x cards)> +sci-libs/mumps:metis - Enable ordering with METIS (sci-libs/metis, sci-libs/parmetis) +sci-libs/mumps:scotch - Enable ordering with sci-libs/scotch sci-libs/oasa:cairo - Add support for Cairo graphics library using dev-python/pycairo sci-libs/openblas:dynamic - Build dynamic architecture detection at run time (for multi targets) sci-libs/openblas:incblas - Build the CBLAS interface sci-libs/openblas:int64 - Build the 64 bits integer library -sci-libs/openmm:cuda - Build Cuda lib -sci-libs/openmm:opencl - Build OpenCL lib sci-libs/pagmo:kepler - Automatically generated description for kepler sci-libs/pagmo:nlopt - Automatically generated description for nlopt -sci-libs/votca-tools:boost - Compile against external boost headers (dev-libs/boost) -sci-libs/xdrfile:dmalloc - Enable use of Debug Malloc +sci-libs/parmetis:double-precision - Floating-point operation done as double precision +sci-libs/parmetis:int64 - Build the 64 bits integer library (needed for > 2^31 vertices) sci-mathematics/Macaulay2:optimization - Accept upstream's choices for -O option, i.e. -O3 almost everywhere. sci-mathematics/algae:intel - Use icc as c compiler sci-mathematics/apron:ppl - Enable optional interface to the Parma Polyhedra Library @@ -83,11 +128,20 @@ sci-mathematics/frama-c:why - ?why? sci-mathematics/gambit:X - Enable gui support using wxWidgets. sci-mathematics/gap:xtom - Automatically generated description for xtom sci-mathematics/giac:fltk - ?fltk? +sci-mathematics/htk:hdecode - Install HDecode, a large vocabulary word recogniser +sci-mathematics/htk:hlmtools - Install the tools for manipulation of language models +sci-mathematics/htk:hslab - Install HSLab a label editor for speech label manipulation +sci-mathematics/htk:htkbook - Build the HTK documentation (HTK Book) sci-mathematics/netgen:opencascade - Enable OpenCASCADE support +sci-mathematics/petsc:afterimage - Use Afterstep image library (media-libs/libafterimage) sci-mathematics/petsc:complex-scalars - Make scalars complex -sci-mathematics/petsc:hypre - Use HYPRE (sci-mathematics/hypre) for preconditioning +sci-mathematics/petsc:hypre - Use HYPRE (sci-mathematics/hypre) and for preconditioning sci-mathematics/petsc:metis - Use METIS (sci-libs/parmetis) for partitioning -sci-mathematics/polybori:sage - Replace the standard python interface by sage's python interface for easy integration in sage. +sci-mathematics/petsc:sparse - Use suitesparse (sci-libs/suitesparse) including cholmod (sci-libs/cholmod) for sparse factorization +sci-mathematics/petsc:superlu - Use superlu (sci-libs/superlu) for preconditioning +sci-mathematics/polymake:libpolymake - Build the polymake library to build applications using the C++ interface. +sci-mathematics/rstudio:desktop - Build the QT4 desktop interface +sci-mathematics/rstudio:server - Build and install the RStudio server sci-mathematics/scilab:gui - Build the Java base graphical interface sci-mathematics/scilab:matio - Enable support for MATLAB file through sci-libs/matio sci-mathematics/scilab:umfpack - Adds support for sparse solving with sci-libs/umfpack @@ -98,37 +152,42 @@ sci-mathematics/why:gappa - ?gappa? sci-mathematics/why:gtk - ?gtk? sci-mathematics/why:jessie - ?jessie? sci-mathematics/why:pff - ?pff? +sci-misc/hfst:foma - Add optional support for foma backend library (sci-misc/foma) +sci-misc/hfst:glib - Parse UTF-8 and collate unicode using glib instead of homebrewn methods sci-misc/hfst:openfst - Add optional support for openfst backend library (sci-misc/openfst) sci-misc/hfst:sfst - Add optional support for sfst backend library (sci-misc/sfst) -sci-misc/nco:ncap2 - Build next generation netcdf arithmetic processor (needs dev-java/antlr) -sci-misc/nco:udunits - Add sci-libs/udunits files support +sci-misc/hfst:xml - Include parsers for grammars and formats that require XML support sci-misc/opennlp-tools:models - Automatically generated description for models sci-misc/salome-kernel:numpy - Enable support for dev-python/numpy sci-misc/salome-med:metis - Add support for metis sci-misc/salome-med:scotch - Add support for scotch sci-physics/abinit:cuda - Enable support for nVidia CUDA +sci-physics/abinit:cuda-double - Enable support for double precision nVidia CUDA +sci-physics/abinit:fftw-threads - Use the threaded version of sci-libs/fftw sci-physics/abinit:fox - Enable support for FoX Fortran XML library +sci-physics/abinit:gui - Build the abinit GUI (requires java) +sci-physics/abinit:libabinit - Build the libabinit used by sci-libs/bigdft (usage not tested yet, circular dependency not resolved) sci-physics/abinit:vdwxc - Activate van der Waals exchange-correlation sci-physics/atompaw:libxc - Use libxc for something sci-physics/elk:libxc - Use sci-libs/libxc library of exchange-correlation functionals by ETSF. sci-physics/espresso:examples - Installs the examples sci-physics/espresso:packages - Installs extra subpackages -sci-physics/fastjet:allcxxplugins - Build all C++ plugins. -sci-physics/fastjet:allplugins - Build all standard plugins. -sci-physics/fastjet:cgal - Use sci-mathematics/cgal instead of bundled algorithms. -sci-physics/root:clarens - Buld the Clarens and PEAC plug-ins, to use in a GRID enabled analysis. +sci-physics/root:c++0x - Build ROOT using the C++11 standard. Not supported, requires sys-devel/gcc>=4.7.0 sci-physics/root:fits - Support for images and data from FITS files with sci-libs/cfitsio +sci-physics/root:geocad - Enable ROOT-CAD interface using sci-libs/opencascade +sci-physics/root:htmldoc - Generate html documentation sci-physics/root:llvm - Build the new cling interactive interpreter based on sys-devel/llvm sci-physics/root:math - Build all math related libraries plugins, needs sci-libs/gsl -sci-physics/root:pythia6 - Builds the interface to Pythia-6 (sci-physics/pythia) high energy physics generation events library -sci-physics/root:pythia8 - Builds the interface to Pythia-8 (sci-physics/pythia) high energy physics generation events library -sci-physics/root:reflex - Builds the reflection database for the C++ interpretor -sci-physics/root:xrootd - Build the xrootd low latency file server +sci-physics/root:pythia6 - Build the interface for sci-physics/pythia version 6.x +sci-physics/root:pythia8 - Build the interface for sci-physics/pythia version 8.x +sci-physics/root:reflex - Build the reflection database for the C++ interpreter +sci-physics/root:xrootd - Build the interface for net-libs/xrootd +sci-visualization/gnuplot:bitmap - Enable dot-matrix printers and pbm terminal sci-visualization/gnuplot:gd - Add support for media-libs/gd. Needed for GIF, JPEG, and PNG image output. -sci-visualization/gnuplot:qt4 - Build Qt4 terminal sci-visualization/gnuplot:thin-splines - Enable thin plate splines sci-visualization/nodemon:pbs - Enable support for the Portable Batch System. sci-visualization/paraview:adaptive - Enable the adaptive paraview application +sci-visualization/paraview:boost - Add support for boost sci-visualization/paraview:cg - Add support for nvidia's cg shaders sci-visualization/paraview:coprocessing - Enable the coprocessing infrastructure which is mainly useful in the context of clusters sci-visualization/paraview:gui - Build paraview's gui not just the server @@ -156,5 +215,4 @@ sys-cluster/openmpi:mpi-threads - Enable MPI_THREAD_MULTIPLE sys-cluster/openmpi:pbs - Add support for the Portable Batch System (PBS) sys-cluster/openmpi:romio - Build the ROMIO MPI-IO component sys-cluster/openmpi:vt - Enable bundled VampirTrace support -sys-fs/ocfs2-tools:external - Enable external locking virtual/mpi:romio - Enable romio, a high-performance portable MPI-IO