From: "David Seifert" <soap@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/phred/
Date: Thu, 7 Jul 2022 19:58:13 +0000 (UTC) [thread overview]
Message-ID: <1657223824.f040325d9ef33ba1c90bfa955b22ca51c8c9f7ff.soap@gentoo> (raw)
commit: f040325d9ef33ba1c90bfa955b22ca51c8c9f7ff
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Jul 7 19:57:04 2022 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Jul 7 19:57:04 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f040325d
sci-biology/phred: update EAPI 6 -> 8
Signed-off-by: David Seifert <soap <AT> gentoo.org>
...red-071220-r1.ebuild => phred-071220-r2.ebuild} | 24 +++++++++-------------
1 file changed, 10 insertions(+), 14 deletions(-)
diff --git a/sci-biology/phred/phred-071220-r1.ebuild b/sci-biology/phred/phred-071220-r2.ebuild
similarity index 69%
rename from sci-biology/phred/phred-071220-r1.ebuild
rename to sci-biology/phred/phred-071220-r2.ebuild
index bf7a0c7338cb..9d7ff9a1f6c8 100644
--- a/sci-biology/phred/phred-071220-r1.ebuild
+++ b/sci-biology/phred/phred-071220-r2.ebuild
@@ -1,28 +1,23 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=8
inherit toolchain-funcs
DESCRIPTION="A base caller for Sanger DNA sequencing"
HOMEPAGE="http://phrap.org/phredphrapconsed.html"
SRC_URI="phred-dist-071220.b-acd.tar.gz"
+S="${WORKDIR}"
LICENSE="phrap"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}"
-
RESTRICT="fetch"
+
PATCHES=(
- "${FILESDIR}/${PN}-071220-fix-build-system.patch"
- "${FILESDIR}/${PN}-071220-fix-qa.patch"
+ "${FILESDIR}"/${PN}-071220-fix-build-system.patch
+ "${FILESDIR}"/${PN}-071220-fix-qa.patch
)
pkg_nofetch() {
@@ -39,11 +34,12 @@ src_compile() {
src_install() {
dobin phred daev
- insinto /usr/share/${PN}
+ insinto /usr/share/phred
doins phredpar.dat
- echo "PHRED_PARAMETER_FILE=${EPREFIX}/usr/share/${PN}/phredpar.dat" > 99phred || die
- doenvd 99phred
+ newenvd - 99phred <<- EOF
+ PHRED_PARAMETER_FILE="${EPREFIX}/usr/share/phred/phredpar.dat"
+ EOF
newdoc DAEV.DOC DAEV.DOC.txt
newdoc PHRED.DOC PHRED.DOC.txt
next reply other threads:[~2022-07-07 19:58 UTC|newest]
Thread overview: 4+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-07-07 19:58 David Seifert [this message]
-- strict thread matches above, loose matches on Subject: below --
2022-09-22 4:09 [gentoo-commits] repo/gentoo:master commit in: sci-biology/phred/ Sam James
2019-02-05 18:08 Ben Kohler
2018-01-13 23:04 David Seifert
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=1657223824.f040325d9ef33ba1c90bfa955b22ca51c8c9f7ff.soap@gentoo \
--to=soap@gentoo.org \
--cc=gentoo-commits@lists.gentoo.org \
--cc=gentoo-dev@lists.gentoo.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox